Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi975g00004 ATGAGCCAGAATCGTAGTTCATCGTTTTCGTCCTCAACAACATCATCTTTGGCCAAGCGCAATGCACCTGCATCTGCATCATCCTCAAACAACAACGCCAAGAAGGTTTTGGCTAAGAAGCGAGCACCTCTCACTAACCTCACCAATCACATTGCTCCTCCACGCAACTCAGCCCAATCATCTTCTTTGGTACCATGCGGAACTAAAGTTGCAAAGACCAAGAAAGAGCCTCTAGCATGCACAACTAGCTCAGCAATTTCCGGCAATAAAATACCCAATTTGCCCAATGTTAAACCTGCTACCGTTGTTTTTCCTAAAGCTACTTGTTTCCCAGAAAGGATTGAAGATGCTCCGTCTGTTGCCACCGTCACTGTTCATGTTTCAAGCAACATGGAGTTTTCGCCGAGTAAATCAGATGGGATGTCAGTTTCTATGGATGAGACAATGTCTTGTGATTCTTTCAAGAGTCCTGAAATTGAATATCTGGACAACAGTGATATTTCAGGACTCGATTCGATTGAGGGAAAGACGTTGAAGAATCTTAACATCTCTGATACTGCAGAGCAAGCAGGCGGCAACTTGTGCAGTAGAGACATACTTGTTGAGTTGGAAAAAACAGACAAATTTTTCAATGTTGATAATAATTACATGGATCCACAACTCTGTGCATCCGTTGCTTGTGATATCTACAAGCACCTACGTGCATCTGAGGCAAAGAAAAGGCCTTCAGCAGACTTCATGGAGAAAATTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATTGACTGGCTTGTGGAGGTGGCTGAAGAGTACAGACTTGTACCTGATACATTGTATTTGACAGTAAATTACATAGATCGGTATCTTTCAGGGAATGTGATGAATAGGCAAAGGCTACAACTACTTGGTGTTGCTTCCATGATGATTGCCTCTAAATATGAGGAGATCTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACGTACTTCAAAGATGAGGTTTTGCAGATGGAATCTACTGTCTTGAATTTTCTAAAGTTCGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGAAGATTTGTTCGTGCAGCTCAAGGAGTCGACGAGGTCCCTTCACTGCAACTAGAGTGCTTGACAAACTATATTGCCGAATTGTCTCTCTTGGAGTACAGCATGCTTTGTTATGCTCCATCACTTATAGCTGCTTCTGCAATTTTCCTGGCCAAATTTATACTTCTTCCTTCAAAGAAACCTTGGAATTCCACATTGCAGCATTACACCCTCTACCAGCCTTCTGATTTGTGTCTTTGTGTAAAGGATCTCCATCGCCTTTGTTGTAATAGCCCTAATTCTAATTTGCCTGCAATTAGGGAGAAATACAGTCAGCACAAGTACAAATATGTGGCCAAGAAGTACTGCCCTGCATCAATACCTCCGGAATTTTTTCAGAATTGA 1473 0.4182 MSQNRSSSFSSSTTSSLAKRNAPASASSSNNNAKKVLAKKRAPLTNLTNHIAPPRNSAQSSSLVPCGTKVAKTKKEPLACTTSSAISGNKIPNLPNVKPATVVFPKATCFPERIEDAPSVATVTVHVSSNMEFSPSKSDGMSVSMDETMSCDSFKSPEIEYLDNSDISGLDSIEGKTLKNLNISDTAEQAGGNLCSRDILVELEKTDKFFNVDNNYMDPQLCASVACDIYKHLRASEAKKRPSADFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMNRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKDEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILLPSKKPWNSTLQHYTLYQPSDLCLCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKYCPASIPPEFFQN 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi975g00004 490 SUPERFAMILY Cyclin-like 218 354 IPR036915 -
Gabi975g00004 490 SUPERFAMILY Cyclin-like 357 481 IPR036915 -
Gabi975g00004 490 MobiDBLite consensus disorder prediction 1 64 - -
Gabi975g00004 490 CDD CYCLIN_AtCycA-like_rpt2 357 471 - -
Gabi975g00004 490 ProSitePatterns Cyclins signature. 259 290 IPR006671 -
Gabi975g00004 490 FunFam Cyclin A1 344 476 - -
Gabi975g00004 490 Pfam Cyclin, C-terminal domain 357 476 IPR004367 -
Gabi975g00004 490 Gene3D - 228 476 - -
Gabi975g00004 490 PANTHER CYCLINS 166 468 IPR039361 -
Gabi975g00004 490 MobiDBLite consensus disorder prediction 49 64 - -
Gabi975g00004 490 PIRSF Cyclin_A_B_D_E 1 486 IPR046965 GO:0016538|GO:0044772
Gabi975g00004 490 CDD CYCLIN_AtCycA_like_rpt1 218 353 - -
Gabi975g00004 490 SMART Cyclin_C_2 357 480 IPR004367 -
Gabi975g00004 490 SMART cyclin_7 361 449 IPR013763 -
Gabi975g00004 490 SMART cyclin_7 264 348 IPR013763 -
Gabi975g00004 490 FunFam Mitotic cyclin 6 242 342 - -
Gabi975g00004 490 MobiDBLite consensus disorder prediction 1 35 - -
Gabi975g00004 490 Pfam Cyclin, N-terminal domain 228 354 IPR006671 -
Gabi975g00004 490 Gene3D - 242 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi975g00004 Gabi-Chr975 106830 110647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi975g00004 3 490 Core Cell Cycle Gene Families AT1G44110 61.663 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi975g00004 K06627 - gmx:100789565 734.176