Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi974g00028 ATGGATGTCGTCGTCAAGCCAGAATTCGAATCCACAGTCGTTTTGCGGGATCAGCCTCGCATGATGCGGGAAGTTTCTGTTGTGAATGGTTACATTGTTTATACTCGAACGAAGAGGTACATGGATTCGTGTAACGGTTTTTCTGAAGACGGAAAATTCAAGAGGTTGAAGGCATTTGCAGAGGCAGAGCATTCAGTTAAAATGGAGAATGGAGTGGATTCCGAGCTGAAGAGCGAGCCTCCAGAGGTTGTGATGAGGTCATTCAGGCGGTGTAGGCAATCGGCGTTGAAAGAAAATGTTGACTCTGGTGATAAGACCGGGACTGAGTCTGAAGTAGCAAATGGTAGCAGCGCATTAGCAGCTCCGAGAAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAAGAAGCCTTTGACTATCAAGGAGCTCTTCGATACAGGCTTGCTTGATGGGGTCTCAGTTGTTTACATGGGCGGCATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGGCACCGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGGGCAGCACAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTATTGAGAGCATGCAGGGGAGCTCCGCTGCATAAGTTGGAGGCGACAGTTCAAAATTTTGTTTGCTCTCCACCTGAAGAAAAATATTTCACGTGTAAAAGGTGCAAAGGATGTTTTCCTTCTTCATGTGTGGGAAGCGTGGGGCCAATATGCTGTTTTTGTGTGGAATCAAAGAAATCTGAAGAAAGTTCGAACGATGTAGTTGGCAAAAGAGTCAGGTCCCCTAGACCAGTGTCGGTCTCCAATCCATCCAGTACTTCTGAGCTGTCTATCTCTTCACAAATTAAGAGACACTGGAAGAAAAGAACAAAGTCATCAAAAAGGATTAGCAGTTCAAATTCTTCCAACAGTGCCTCTGTGCCTATTCTACCCCGGAAGAAAATTCTGTGGAAGATGGAAAGAAAGTCACTGTCAGTGAAGTTGAAGATCCCGGAAACTACGTCAAATTCGAAGTGTTTAACTCCACAAAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAATACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATATATTTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCTATATCTCTCTCAAAAGATCGAAAATACTCTGCAAAAGACAATGATGATATATGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATACAGAATGTGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCGAGAGAGAAAAGTTTGTAGCATACAATGCCAATGCTGTAGCAGCTGGAAGGGTTGAAGGAGTGGATCCAATTGAACAGATAACAAATAGATGCATACGCATAGTCAAAGACATTGAAGCTGAGCTTAGTGGATGCGCTTTATGCGGGGGTGTTGACTTCAGCAGATCTGGATTTGGTCCACGCACAATAATACTGTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATAGCATATTTAAAGGAATTGCCAGAAGGGAATTGGCTTTGTTGCAGTGATTGCATGAGAGCACATTCTACTTTGGAGAACCTTTTGGTTAGGGAAGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAATAAGAAGCTAGTGGAAAAAGAATTACAACCCATCAAAGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGTTTTAATCCTATAATTGACGCAGCTAGTGGACGTGATCTTATTCCGGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTATTAATGGTCAAATATTGCTGA 2226 0.4317 MDVVVKPEFESTVVLRDQPRMMREVSVVNGYIVYTRTKRYMDSCNGFSEDGKFKRLKAFAEAEHSVKMENGVDSELKSEPPEVVMRSFRRCRQSALKENVDSGDKTGTESEVANGSSALAAPRNKLELKMSKKIVVNKKPLTIKELFDTGLLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGHRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHKLEATVQNFVCSPPEEKYFTCKRCKGCFPSSCVGSVGPICCFCVESKKSEESSNDVVGKRVRSPRPVSVSNPSSTSELSISSQIKRHWKKRTKSSKRISSSNSSNSASVPILPRKKILWKMERKSLSVKLKIPETTSNSKCLTPQNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDICIICWDGGNLLLCDGCPRAFHTECASLSSIPRGDWYCQFCQNMFEREKFVAYNANAVAAGRVEGVDPIEQITNRCIRIVKDIEAELSGCALCGGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKIAYLKELPEGNWLCCSDCMRAHSTLENLLVREAERLPESLLGVINKKLVEKELQPIKDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIIDAASGRDLIPAMVYGRNVRGQEFGGMYCALLMVKYC 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi974g00028 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 633 IPR013083 -
Gabi974g00028 741 SUPERFAMILY FYVE/PHD zinc finger 472 531 IPR011011 -
Gabi974g00028 741 SMART PHD_3 573 630 IPR001965 -
Gabi974g00028 741 SMART PHD_3 485 526 IPR001965 -
Gabi974g00028 741 MobiDBLite consensus disorder prediction 286 340 - -
Gabi974g00028 741 PANTHER AUTOIMMUNE REGULATOR 66 739 - -
Gabi974g00028 741 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 472 549 - -
Gabi974g00028 741 ProSitePatterns Zinc finger PHD-type signature. 486 525 IPR019786 -
Gabi974g00028 741 Pfam PHD-finger 485 527 IPR019787 -
Gabi974g00028 741 Pfam Tify domain binding domain 423 469 IPR032308 -
Gabi974g00028 741 Pfam Tify domain binding domain 171 226 IPR032308 -
Gabi974g00028 741 SUPERFAMILY FYVE/PHD zinc finger 565 630 IPR011011 -
Gabi974g00028 741 CDD PHD1_AIRE 486 525 - -
Gabi974g00028 741 ProSiteProfiles Zinc finger PHD-type profile. 483 528 IPR019787 -
Gabi974g00028 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 471 561 IPR013083 -
Gabi974g00028 741 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi974g00028 Gabi-Chr974 174561 182715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi974g00028 132 738 PHD Transcription Factor Family AT2G36720 53.376 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi974g00028 TDBD 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi974g00028 - - gmx:100802562 1166.76