Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi974g00026 ATGGATGTCGTCGTCAAGCCAGAATTCGAATCCACAGTCGTTTTGCGGGATCAGCCTCGCATGATGCGGGAAGTTTCTGTTGTGAATGGTTACATTGTTTATACTCGAACGAAGAGGTACATGGATTCGTGTAACGGTTTTTCTGAAGACGGAAAATTCAAGAGGTTGAAGGCATTTGCAGAGGCAGAGCATTCAGTTAAAATGGAGAATGGAGTGGATTCCGAGCTGAAGAGCGAGCCTCCAGAGGTTGTGATGAGGTCATTCAGGCGGTGTAGGCAATCGGCGTTGAAAGAAAATGTTGACTCTGGTGATAAGACCGGGACTGAGTCTGAAGTAGCAAATGGTAGCAGCGCATTAGCAGCTCCGAGAAACAAGTTGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAAGAAGCCTTTGACTATCAAGGAGCTCTTCGATACAGGCTTGCTTGATGGGGTCTCAGTTGTTTACATGGGCGGCATTAAGAAGGCTTCAGGATTACGGGGTGTTATTAGAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGGCACCGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGGGCAGCACAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTATTGAGAGCATGCAGGGGAGCTCCGCTGCATAAGTTGGAGGCGACAGTTCAAAATTTTGTTTGCTCTCCACCTGAAGAAAAATATTTCACGTGTAAAAGGTGCAAAGGATGTTTTCCTTCTTCATGTGTGGGAAGCGTGGGGCCAATATGCTGTTTTTGTGTGGAATCAAAGAAATCTGAAGAAAGTTCGAACGATGTAGTTGGCAAAAGAGTCAGGTCCCCTAGACCAGTGTCGGTCTCCAATCCATCCAGTACTTCTGAGCTGTCTATCTCTTCACAAATTAAGAGACACTGGAAGAAAAGAACAAAGTCACTGTCAGTGAAGTTGAAGATCCCGGAAACTACGTCAAATTCGAAGTGTTTAACTCCACAAAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCACGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAATACTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGTTGGGCTTCTCGCAAGAAACCTTATGCATATATTTACACGTCAAATGGGGTGTCACTCCATGAGTTAGCTATATCTCTCTCAAAAGATCGAAAATACTCTGCAAAAGACAATGATGATATATGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATACAGAATGTGCATCTCTATCAAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCGAGAGAGAAAAGTTTGTAGCATACAATGCCAATGCTGTAGCAGCTGGAAGGGTTGAAGGAGTGGATCCAATTGAACAGATAACAAATAGATGCATACGCATAGTCAAAGACATTGAAGCTGAGCTTAGTGGATGCGCTTTATGCGGGGGTGTTGACTTCAGCAGATCTGGATTTGGTCCACGCACAATAATACTGTGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCACAAGATAGCATATTTAAAGGAATTGCCAGAAGGGAATTGGCTTTGTTGCAGTGATTGCATGAGAGCACATTCTACTTTGGAGAACCTTTTGGTTAGGGAAGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAATAAGAAGCTAGTGGAAAAAGAATTACAACCCATCAAAGACATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGTTTTAATCCTATAATTGACGCAGCTAGTGGACGTGATCTTATTCCGGCCATGGTTTATGGAAGGAATGTGCGGGGTCAGGAGTTTGGAGGAATGTATTGTGCATTATTAATGGTCAATTCATGTGTGGTGTCTGCGGGCATGCTTCGAATTTTTGGCACAGATATTGCTGAACTCCCTTTAGTTGCAACAACTAACAGGAACCATGGAAAGGGTTATTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTTTTAAATGTGAAGAACCTTGTGCTGCCAGCTGCAGAAGAAGCAGAATCCATATGGACTGATAAATTTGGGTTTAGCAAGATGAAACCAGACCAGCTTACCAACTACAGAAAGACCTGTAATCAAATGGTGACATTCAAAGGGACAAATATGCTTCATAAAATGGTGCCACCATGTCGGGTCATCAATAATCAATCATGA 2463 0.432 MDVVVKPEFESTVVLRDQPRMMREVSVVNGYIVYTRTKRYMDSCNGFSEDGKFKRLKAFAEAEHSVKMENGVDSELKSEPPEVVMRSFRRCRQSALKENVDSGDKTGTESEVANGSSALAAPRNKLELKMSKKIVVNKKPLTIKELFDTGLLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGHRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGAPLHKLEATVQNFVCSPPEEKYFTCKRCKGCFPSSCVGSVGPICCFCVESKKSEESSNDVVGKRVRSPRPVSVSNPSSTSELSISSQIKRHWKKRTKSLSVKLKIPETTSNSKCLTPQNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDICIICWDGGNLLLCDGCPRAFHTECASLSSIPRGDWYCQFCQNMFEREKFVAYNANAVAAGRVEGVDPIEQITNRCIRIVKDIEAELSGCALCGGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKIAYLKELPEGNWLCCSDCMRAHSTLENLLVREAERLPESLLGVINKKLVEKELQPIKDIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIIDAASGRDLIPAMVYGRNVRGQEFGGMYCALLMVNSCVVSAGMLRIFGTDIAELPLVATTNRNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMKPDQLTNYRKTCNQMVTFKGTNMLHKMVPPCRVINNQS 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi974g00026 820 MobiDBLite consensus disorder prediction 286 307 - -
Gabi974g00026 820 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 441 518 - -
Gabi974g00026 820 SUPERFAMILY FYVE/PHD zinc finger 534 599 IPR011011 -
Gabi974g00026 820 SUPERFAMILY FYVE/PHD zinc finger 441 500 IPR011011 -
Gabi974g00026 820 PANTHER AUTOIMMUNE REGULATOR 66 809 - -
Gabi974g00026 820 ProSiteProfiles Zinc finger PHD-type profile. 452 497 IPR019787 -
Gabi974g00026 820 SMART PHD_3 542 599 IPR001965 -
Gabi974g00026 820 SMART PHD_3 454 495 IPR001965 -
Gabi974g00026 820 ProSitePatterns Zinc finger PHD-type signature. 455 494 IPR019786 -
Gabi974g00026 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 530 IPR013083 -
Gabi974g00026 820 Pfam PHD-finger 454 496 IPR019787 -
Gabi974g00026 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 602 IPR013083 -
Gabi974g00026 820 Coils Coil 813 820 - -
Gabi974g00026 820 Pfam Tify domain binding domain 171 226 IPR032308 -
Gabi974g00026 820 Pfam Tify domain binding domain 392 438 IPR032308 -
Gabi974g00026 820 CDD PHD1_AIRE 455 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi974g00026 Gabi-Chr974 174019 182715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi974g00026 132 817 PHD Transcription Factor Family AT2G36720 53.899 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi974g00026 TDBD 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi974g00026 - - gmx:100802562 1345.49