Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi974g00024 ATGAGATTCAACAGAACCCTCTTTTGGCTCTCTGCCTTTGTCATTTCTCTCTTTTCTATCATAGTTGTTCATCATACCACGCCACCTTCCCCCACCGCTACCACTGCCATTACTCCTCAAGATAGTTTCAATTCTCAGCTAGGTATACTTAGTAAGATTATAAAGATTAGTGGTGTTCAAGACTTAGTGTCCTTATTGCTAACAAGTATTGCTTGGGGGAGACATCATCATCGGAAGAGGCATAAGGACATATGTAACAAGACCAAATGGGCTTCTAGGCTTACTCCATACTATAATGTGACTCTTGTTTTCACGGTTGACTTAAAGGGTTGTGCTAACTTCAGTAGCGTGCAGAAAGCAATAGATGCTGTTCCTGAATCTAGCTCTGATAACACCCTTATTATCATCGATTCTGGTACATACAGGGAGAAGGTAGTGGTGCAGGCAAACAAAACAAACTTGATACTTGAAGGTCAAGGTTACCTTAATACAATCATAGAATGGAATGACACTGCTAATTCCACCGGAGGGACTTCCTATAGCTACACGTTTGCCATCTTTGCTTCTAAGTTCACGGCTTACAATATCAGCTTTAAAAACACAGCTCCTAGGCCGTTACCGGGAGAGGTTGGGGCACAGGCAATTGCATTGACAGTTACAGGTGATCAATCCGCATTCTATGGTTGTGGGTTCTATGGTGCGCAGGACACACTCAATGATGAAAGTGGGAGACATTATTTTAAAGAATGTTTCATACAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTATCATAAACTCTATAGCAAAAGAAGACTGGGTTGGGGTTAGTGGGTCAATCACAGCACAAGGGAGGCAAACATTGCAGGAGCAAAGTGGGTTTTCTTTTGTAAAATGTAACATTTTGGGAAGTGGCAAAGTGTGGCTTGGTAGAGCATGGGGAGCATGTGCCACTGTGGTCTTCTCAAGAACATACATGTCTGATGTCGTAGCTGCTGATGGATGGAACGATTGGAGAGATCCATCAAAAGACCAGAGCGTCTTCTTTGGGGAGTACCGTTGTGTGGGACCTGGAGCAAACTATGCATCTAGAGTCTCTTATGGGAAGCAACTCAGAGATTATGAAGCAATCTCCTACATGAATATTTCCTACATTGATGGAAATGATTGGCTTGTTAATTATTTTCAAAACTATGCTAACCATTCATGGAGTTAG 1236 0.4183 MRFNRTLFWLSAFVISLFSIIVVHHTTPPSPTATTAITPQDSFNSQLGILSKIIKISGVQDLVSLLLTSIAWGRHHHRKRHKDICNKTKWASRLTPYYNVTLVFTVDLKGCANFSSVQKAIDAVPESSSDNTLIIIDSGTYREKVVVQANKTNLILEGQGYLNTIIEWNDTANSTGGTSYSYTFAIFASKFTAYNISFKNTAPRPLPGEVGAQAIALTVTGDQSAFYGCGFYGAQDTLNDESGRHYFKECFIQGSIDFIFGNARSLYEDCIINSIAKEDWVGVSGSITAQGRQTLQEQSGFSFVKCNILGSGKVWLGRAWGACATVVFSRTYMSDVVAADGWNDWRDPSKDQSVFFGEYRCVGPGANYASRVSYGKQLRDYEAISYMNISYIDGNDWLVNYFQNYANHSWS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi974g00024 411 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 98 398 - -
Gabi974g00024 411 SUPERFAMILY Pectin lyase-like 102 398 IPR011050 -
Gabi974g00024 411 ProSitePatterns Pectinesterase signature 2. 252 261 IPR033131 -
Gabi974g00024 411 Gene3D - 98 407 IPR012334 -
Gabi974g00024 411 FunFam Pectinesterase 98 403 - -
Gabi974g00024 411 Pfam Pectinesterase 106 395 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi974g00024 Gabi-Chr974 167725 171117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi974g00024 79 398 Carbohydrate Esterase AT1G05310 51.852 3.69e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi974g00024 - - gmx:100802034 668.692