Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi974g00001 ATGGCATTTCCTTTGGGAATTATTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATCATTATCTCCCCATGGAGATATGAAGCGTATAACAATTTTGAAGGGGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCATGCAAGAGGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAGTAAAAGTGTGGAATGTTGGAGGAGCTGTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGGTCAGACCTATGAAGGCAAAAACTTCCCATAA 729 0.4582 MAFPLGIILFFLIALPISDVHADIIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKREGGIRFTMNGNPYFNLVKVWNVGGAVRVTASDGRSSVSRRVAPKYWQFGQTYEGKNFP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi974g00001 242 CDD DPBB_EXPA_N 58 182 - -
Gabi974g00001 242 Gene3D - 43 183 IPR036908 -
Gabi974g00001 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 187 IPR007112 -
Gabi974g00001 242 PANTHER EXPANSIN-A15 52 213 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Gabi974g00001 242 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Gabi974g00001 242 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Gabi974g00001 242 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Gabi974g00001 242 SUPERFAMILY Barwin-like endoglucanases 57 205 IPR036908 -
Gabi974g00001 242 SMART dpbb_1 92 177 IPR007112 -
Gabi974g00001 242 Pfam Lytic transglycolase 92 177 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi974g00001 Gabi-Chr974 562 2116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi974g00001 54 241 Expansin Gene Family AT3G55500 53.913 3.59e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi974g00001 - - qsa:O6P43_010232 329.331