Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi972g00007 ATGAATAGCATGACAAGTGGGGGTGATGCTCGGAAAATGTCCAAGGGTCGCCGGTCATCTTTCTTGGTTGAAGAAGCTGGTGGTGGAGGTAACTTGGGAGGTGAAGTTTCTTTAAAGAAAGGCCCATGGACATCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAGAACGGAGAGGGAAATTGGAATGCGGTCCAAAAGCATTCGGGACTTGCCCGATGTGGTAAAAGTTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTGAAAAAGGGTGCATTTACTGCAGAGGAAGAAAGCAAAATCCTTGAGCTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGAATTAAGAGAATGCAACGAGCTGGCTTACCAATCTACCCTGAGGAAATATGCCGACGGGTTCTTAGTGGCAATCAAGAAAGTCTAAACATCGGCACCTTGACAAATGAAGCCAGCCAGCATGATGATCTCTCACAAACAGATAATTTTGCTATACCAGATGTGGAATTTAAAAATTTCAAACTACGTCCAGGTCTATCATATGGACCATCAATTTTTGACATACCTGAAAGCAGCATGCTTGAACAAAGTTCGGACTCATCCCATAATTATAATATCTTGTTCCCAATGATGCATCCGTCAAAGCGCCTTCGGGAGTCAGATATGCTATACAATAGTTTGGGCAGTTGTATCAGTAGTGCTGTCCCACTATTTGATCAGTATGGCAATTATACTTATGAGAAAATTCCTGACCATCCTACATTGACTTCTCCATGTGATCCTATTCTTAACACCAGTGATCACTTTCATGGTGATAACCTTACTGGCAGCCATGCCACTTTAAATGGCAATACCTCTTCTTCTACGCCCCTATCTGGGGCCATGAAGTTTGAGCTCCCTTCACTCCAATATTTCGAAACTCAACAAGGTAGCTGGGGCATGCCCGCGTCCCCGCTTCCTTCACTTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAGTTGAGCCTATTCTGTCGGATCCAGTTTCTCCACAGAGCAGTGGTTTGCTGGAAGCAATAATCTACCAATCAAAGAGCTTGAAAGGCTCAAATACTGATTCATATCAAGAGACAACTAAAAATTGTGTGCCCAATGAAGCAGTCAAGAGTTCAACATCAAATCCCTGTAAGACAGAATGGGATGAACAAGGGGACCCGAATTCCCCCTTTGGTCAATCTGCTGCTTCGGTTCTGACTGACTATACTCCTATTAGCATGTGCTCAGTGGATGGCCCCCAATCAGTTGAAACCACTCAGGATCAACATATTAAGCATGATGCAGTTACACAGTTCCCAGCATACGATTCAAGGAAGAAAGAAAATACAAATCAGATAGATTTTATGCGGCCTGATGCTTTACTCGACTTAGGTTGGTTTGGGAATGGCACTGAGTATGGCAATGATCAATCTATTCTAAAAGATGCTTTTGGTTCATTTCTTGGTGATGATTTCCATGGTTATAACTAG 1575 0.4311 MNSMTSGGDARKMSKGRRSSFLVEEAGGGGNLGGEVSLKKGPWTSAEDAILVEYVKKNGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTAEEESKILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEEICRRVLSGNQESLNIGTLTNEASQHDDLSQTDNFAIPDVEFKNFKLRPGLSYGPSIFDIPESSMLEQSSDSSHNYNILFPMMHPSKRLRESDMLYNSLGSCISSAVPLFDQYGNYTYEKIPDHPTLTSPCDPILNTSDHFHGDNLTGSHATLNGNTSSSTPLSGAMKFELPSLQYFETQQGSWGMPASPLPSLESVDTLIQSPPVEPILSDPVSPQSSGLLEAIIYQSKSLKGSNTDSYQETTKNCVPNEAVKSSTSNPCKTEWDEQGDPNSPFGQSAASVLTDYTPISMCSVDGPQSVETTQDQHIKHDAVTQFPAYDSRKKENTNQIDFMRPDALLDLGWFGNGTEYGNDQSILKDAFGSFLGDDFHGYN 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi972g00007 524 SMART sant 92 140 IPR001005 -
Gabi972g00007 524 SMART sant 39 89 IPR001005 -
Gabi972g00007 524 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Gabi972g00007 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Gabi972g00007 524 CDD SANT 95 136 IPR001005 -
Gabi972g00007 524 FunFam MYB-related transcription factor 39 92 - -
Gabi972g00007 524 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Gabi972g00007 524 Gene3D - 95 141 - -
Gabi972g00007 524 CDD SANT 42 87 IPR001005 -
Gabi972g00007 524 MobiDBLite consensus disorder prediction 402 424 - -
Gabi972g00007 524 Gene3D - 39 92 - -
Gabi972g00007 524 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Gabi972g00007 524 FunFam Transcription factor GAMYB 95 141 - -
Gabi972g00007 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Gabi972g00007 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 511 - -
Gabi972g00007 524 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Gabi972g00007 524 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi972g00007 Gabi-Chr972 118695 125450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi972g00007 37 520 MYB Transcription Factor Family AT5G06100 39.757 4.43e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi972g00007 Myb_DNA-bind_6 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi972g00007 K09422 - gmx:100800658 780.4