Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi971g00009 ATGGGCCGTTCAAGGACAACCTTCAAACGTATTCCAAATGATAAAGCTCGAAAAGAAACTTTCATGCAGAGAAGGAAGGGACTAATGAAGAAAGTATCCGAATTTTCAACTATGTGTGGAGTTGAAGCTTGCTTAATTGTGTATGATGAGAATGGGGATGCTCAACCTATGACTTGGCCCCGAGACCCTATAAAGGCACACTCTATCATTGAAAAGTATGAGCGTCAAAAAAATAAGAAACCCCTCAAGGCCTTTGATCTTGAAGACTTTTTCAAGAATAAGAAGAACATGGTTGAAGCTGAGATTTCCAGAGTGAATAAAGATATCTTGAAGACAAAGTATCCAACTTGA 351 0.3875 MGRSRTTFKRIPNDKARKETFMQRRKGLMKKVSEFSTMCGVEACLIVYDENGDAQPMTWPRDPIKAHSIIEKYERQKNKKPLKAFDLEDFFKNKKNMVEAEISRVNKDILKTKYPT 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi971g00009 116 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi971g00009 116 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 86 - -
Gabi971g00009 116 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Gabi971g00009 116 CDD MADS_SRF_like 2 75 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gabi971g00009 116 SUPERFAMILY SRF-like 1 80 IPR036879 GO:0003677|GO:0046983
Gabi971g00009 116 Gene3D - 13 100 IPR036879 GO:0003677|GO:0046983
Gabi971g00009 116 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi971g00009 116 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi971g00009 116 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi971g00009 116 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi971g00009 Gabi-Chr971 189633 189983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi971g00009 1 116 Type I MADS-box Gene Family AT5G55690 36.364 2.61e-18 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi971g00009 SRF-TF 5.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi971g00009 - - gmx:100777824 155.606