Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi971g00002 ATGTCTTCCTCTCTCATCTGTAGGAAGAGAAAACGATGCCCCAAGGTTTTCAGGTTTCACTCCTTCGCTGACCATGGTTGCCCCATCGCACCTTCTGGTCCCTTCCGCGACAACGTTCGCTTATTTCTTCAAGAAGCGGCACAACCCCAAGATTACACTCTCTCTGGCAACCCCCTATGGTGCACCCTTCTCATTCTCAACCGCGACAACACTAACCTAACGGCTCCTCTCTACACCATCGAAGAGGACGTTAACCGTTCTTCCAATCCCTTCTGCGATCATTGCCGCTGTGTAGGTTGGAGCGGCCATTATGTATCAAAGAGACGATACCATTTCATAATCCCGATGGACAATGGGTGGCATAAACCCTTAATTGAAGGTGCTCTGGATAGTCAGAGTCATCTCTTGCATGGGGTTATTCACTGCAATGGATACGGCCATTTGCTTCGTCTCAATGGTGTAGAAGGGGGTTCTAGAGTTCTCAGTGGGAGAGAGATCATGGATCTCTGGGACAGGATCTGCATCAATCTTGGAGCAAGGAAAATTACAGTGGAAGATGCCTCAAGGAAGAGGTCTATGGATCTTCGGTTACTTCATGGAGTTGCTTATGGGCACTCTTGGTATGGTCGGTGGGGCTATAGATTTTGCCGTGGAAGCTTCGGTGTAACTGAGCAAAATTACTATGAAGCAATTGAGGCTCTTGGTACTTTGGAGCTTGAAAAGATTGTAAAAGATTTCAGCGAGACAAAGTGCCACAAAAAAATCAAACAAATGATTCGCTGCTATAGAGATATGAGTGAAGCTCAGATTATCACAATCAGAGATCTTCTCAGGTTTATGCTTACTGTCAGGTCTCGTGCTCCTGTTTCTAAGATAGCAGAAATTTCTGCTGCTGCTCCTCCCATGAAGGAAAAATCTGCTAGGTATAAGAAGTTCAGCTGTGCAGTGACTTCTATGGATGGCAGGTGGCCAACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTTGATGTACTTAAAGAGCACAAGGCTGCCCAATCAGGTTCTTGTGGGATGACAAGGCAAGATGTGAGAGATGCATCTCGGCTCCACATTGGTGATACGGGCTTACTGGATTATGTGCTGAAATCACTTAACAATGTGATTGTTGGAAATTTTGTTGTTCTTCGCAAGGTGAACCCATCAACTCGGATCCTGGAATATACTATTGATGAGCTTGGCAAGGGTTTCAAAGCCCCTGAACTGGAGTCTTCTGGGGTAATGGCTGTTGTAGATCCCCAAGTAGAAGCATCTTGGGTTCCTGGTAGTGATGTCTACAGCGATGTGTTTTATCTGTACAAGAATGTACTATTAGGCTACCTTGATTCAGAACCAGTGGACTTGGCAGCTCGGACAATTCTTGACAGCAGGCACTTCGTGAAGGAGTGGGCTTTAAGGGATGACATGGAGCAGGTATTGACATGCATATGCCGCTTGAAGCTACATTTTGTGGACACTGAGTCTGAGTTGAAAGGGCTACCTTGTGGCGAGATTGTTATGGTTCCACTGCAAGCAACAGTTGGAGACTTGAAGCAAGCTGCTGAGGCTGCTCTGAGGGATACTTGCTGCATTGCAGAAAGACTTGTAGTGACAGATATTGCAGAATTGATGGATGCAAGTGATGAGGAAGTCCTTTTTGGACTAATCCGGTCTGGTGTGGAACTTTCTGTGATGGGTGTTGCCATAGATTCCTGTACACCATTGAAGTACCAGGGAGGGTGTGACAATTCGAAGGTGAGGTGTGAATGTGGTGCTCGTGACGATGATGGTGAAAGAATGGTGGCTTGTGACATCTGTGAAGTGTGGAAGCATACACGCTGCTGTGGAATCGATGACTCGGAGAAAGTGCCACCATTTTTTGCATGCCCTGGCTGTTGGGATTCACTTGTACCCCCAAGGGTTGAATCCGGCTTCAGTCTGAATTGTGGTGATGATTTTCTGATTCCAAGGGTCTATAGTCTCTAG 2004 0.4646 MSSSLICRKRKRCPKVFRFHSFADHGCPIAPSGPFRDNVRLFLQEAAQPQDYTLSGNPLWCTLLILNRDNTNLTAPLYTIEEDVNRSSNPFCDHCRCVGWSGHYVSKRRYHFIIPMDNGWHKPLIEGALDSQSHLLHGVIHCNGYGHLLRLNGVEGGSRVLSGREIMDLWDRICINLGARKITVEDASRKRSMDLRLLHGVAYGHSWYGRWGYRFCRGSFGVTEQNYYEAIEALGTLELEKIVKDFSETKCHKKIKQMIRCYRDMSEAQIITIRDLLRFMLTVRSRAPVSKIAEISAAAPPMKEKSARYKKFSCAVTSMDGRWPTRRLEFAAQVIVDVLKEHKAAQSGSCGMTRQDVRDASRLHIGDTGLLDYVLKSLNNVIVGNFVVLRKVNPSTRILEYTIDELGKGFKAPELESSGVMAVVDPQVEASWVPGSDVYSDVFYLYKNVLLGYLDSEPVDLAARTILDSRHFVKEWALRDDMEQVLTCICRLKLHFVDTESELKGLPCGEIVMVPLQATVGDLKQAAEAALRDTCCIAERLVVTDIAELMDASDEEVLFGLIRSGVELSVMGVAIDSCTPLKYQGGCDNSKVRCECGARDDDGERMVACDICEVWKHTRCCGIDDSEKVPPFFACPGCWDSLVPPRVESGFSLNCGDDFLIPRVYSL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi971g00002 667 CDD PHD_MMD1_like 594 638 - -
Gabi971g00002 667 SUPERFAMILY FYVE/PHD zinc finger 584 644 IPR011011 -
Gabi971g00002 667 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 648 - -
Gabi971g00002 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 584 648 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi971g00002 Gabi-Chr971 16887 23304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi971g00002 6 644 PHD Transcription Factor Family AT5G22260 33.333 3.04e-122 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi971g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi971g00002 K26271 - gmx:100813850 961.444