Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi971g00001 ATGTCTTTCTCATTCAATCCGAAACTGTTCTCAATCCTTCTGTTCTACATACTTGGCTTCCTTATCTTTGCACCTGCTGAAACAGCCTCAACTTTCAGCCATTACAACTGCACAAGCATGAATACATATGCTCGCAATAGCACTTACCAATTCAACATAAACACACTCTTAACTGCACTTTCATCCAAAGCTTCTGCCAGCACCAACCAAGGTTTCTACAACACCACAATCAGTGGAATAAACACTTCAGACACTATATATGGACTCTTCATGTGCACAGGATACATAGAACTCTGTGGAGAATGTGTTAGGAACTCCATCAAGACACTTGCCTCAAGGTGTGCCTTCAATAAAGAAGCTATAATGTGGTCAGATGAATGCATGGTTCGCTACTCAAACAGGTCTTTCTTCAACACTATGGAGGAAAAGCCATCATCATGTGTGCAGAACAAGGAAGATTATCGAGGGGTATTGGAAAGCTTCAACAAAGTGTTAAGATCCTTGATGGAAGATCTTCTAACTCAAGCAAGTGAAGCTCCAATGGGTTCTAATAAATTTGCTTTCAAGAAAGAAATGATCTCAGAGGACAAATTCTTGTTTGGCCTTGCTCAGTGCATCCCCAACCTCTCCAAGGACAATTGCAGGCAGTGCCTTGGGGATGCCATGGCTTATCTTCAAACTTCATGTGCTAGAGGCAAGATAGGAGGAAGAGTTTTGTATCCAAGTTGTATTGTTAGATATGATCCTTATCTATTTCATCCCCTTCTTCTACCTATAGGCAAAAAAAGGAACCTTGGAGCATTGGCAACTACCATAATTTTTCATGCACTTGTTCCAGTTATGAATGATTTTTTAATTTTAAACTTTTTTGGTGTAGTTGGGGAAGAGATTACAACAGAAATGAACTCTTTGCAATTTGATTTTCGTAGTATTCAAGAAGCAACAAACAAGTTTTCTGTTGAAAACAAGATAGGGGAAGGTGGTTTTGGATCAGTATATTGGGGTATGCTTCCTAATAATGGACAAGAAATAGCGGTGAAGAGGCTCACAAGAAATTCAAGTCAAGGAGCAACAGAATTTAAGAATGAGGTTTTGCTAATAGCCAAGCTTCAACACAGAAATCTTGTGAGACTGTTGGGATTTTGCATGGAAAGGGATGAGAAGATACTCATTTATGAATTTGTGCACAACAAAAGCCTTGATTACTACCTATTCAGTCGCGAAAACCATAGAAAATTAACTTGGCCTGAACGTTACAAGATCATAAGAGGAATAGCCCGAGGTATTCTTTATCTGCATGAGGATTCTCATCTCAAAATCATACACCGCGATCTTAAACCTAGCAACATTTTGTTAGATAGCAAAATGAATGCAAAGATATCAGATTTTGGCTTGGCAAGGATTATTGGCATTGATCAAATGCAAGGAAATACTAGTATAATTGCTGGGACATATGGCTACATGTCTCCAGAATATGCAATGCTTGGCCAATTTTCTGTTAAATCTGATGTGTTCAGCTTTGGTGTCATAATTCTCGAGATTGTTACTGGCAAAAGAAATGTAGACTTTAACGGAGTAGATTCTATTGTTGACCTGCTGAGCCATGCTTGGAAGAAGTGGAGGGATGGTAAGATCTTGGAATTGTTGGATCCCACATTAGCACACATGTTTTTTGAAACAGAAGTGAATAGGTGCATACAAATTGGTCTACTATGTGTGCAAGAAAACCCACAACAGAGGCCTACTATGGCAACAATTGCTTTGTATTTTAATTGTGATGCAATGGATCTGCCATTACCTAAAGAGCCAGCATTTTTCATGCATGGAAGCACAGAATCAAGGATGACTAAGAAGGAATTTGACGACCTAGGAGTTATTTAA 1881 0.3892 MSFSFNPKLFSILLFYILGFLIFAPAETASTFSHYNCTSMNTYARNSTYQFNINTLLTALSSKASASTNQGFYNTTISGINTSDTIYGLFMCTGYIELCGECVRNSIKTLASRCAFNKEAIMWSDECMVRYSNRSFFNTMEEKPSSCVQNKEDYRGVLESFNKVLRSLMEDLLTQASEAPMGSNKFAFKKEMISEDKFLFGLAQCIPNLSKDNCRQCLGDAMAYLQTSCARGKIGGRVLYPSCIVRYDPYLFHPLLLPIGKKRNLGALATTIIFHALVPVMNDFLILNFFGVVGEEITTEMNSLQFDFRSIQEATNKFSVENKIGEGGFGSVYWGMLPNNGQEIAVKRLTRNSSQGATEFKNEVLLIAKLQHRNLVRLLGFCMERDEKILIYEFVHNKSLDYYLFSRENHRKLTWPERYKIIRGIARGILYLHEDSHLKIIHRDLKPSNILLDSKMNAKISDFGLARIIGIDQMQGNTSIIAGTYGYMSPEYAMLGQFSVKSDVFSFGVIILEIVTGKRNVDFNGVDSIVDLLSHAWKKWRDGKILELLDPTLAHMFFETEVNRCIQIGLLCVQENPQQRPTMATIALYFNCDAMDLPLPKEPAFFMHGSTESRMTKKEFDDLGVI 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi971g00001 626 ProSiteProfiles Gnk2-homologous domain profile. 31 136 IPR002902 -
Gabi971g00001 626 ProSiteProfiles Gnk2-homologous domain profile. 142 252 IPR002902 -
Gabi971g00001 626 Gene3D Phosphorylase Kinase; domain 1 293 394 - -
Gabi971g00001 626 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Gabi971g00001 626 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 40 610 - -
Gabi971g00001 626 FunFam cysteine-rich receptor-like protein kinase 10 395 597 - -
Gabi971g00001 626 ProSiteProfiles Protein kinase domain profile. 318 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi971g00001 626 CDD STKc_IRAK 324 587 - -
Gabi971g00001 626 SUPERFAMILY Protein kinase-like (PK-like) 302 610 IPR011009 -
Gabi971g00001 626 Pfam Protein tyrosine and serine/threonine kinase 320 587 IPR001245 GO:0004672|GO:0006468
Gabi971g00001 626 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 288 394 - -
Gabi971g00001 626 Pfam Salt stress response/antifungal 152 248 IPR002902 -
Gabi971g00001 626 Pfam Salt stress response/antifungal 37 133 IPR002902 -
Gabi971g00001 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Gabi971g00001 626 Gene3D Transferase(Phosphotransferase) domain 1 395 594 - -
Gabi971g00001 626 SMART serkin_6 318 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi971g00001 626 Gene3D - 29 136 IPR038408 -
Gabi971g00001 626 Gene3D - 145 252 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi971g00001 Gabi-Chr971 6263 9494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi971g00001 3 614 Receptor kinase-like Gene Family AT4G05200 44.257 7.65e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi971g00001 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi971g00001 - - mtr:11443024 817.764