Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi962g00004 ATGGCCTCCATGCCCTTGGGGCCGAACCACCACCAACCACCGCTGGCAGTGGCTCCGCAACCGCAACAACCGCCGCAGTTTCAGGCGCAAGCTGAAGTGGCTCGACGGAGCTCCGATGTGGAGACCGATAAGTTTCAGGAAATGTCAGCTACTGTCATCGAAGGGAATGATGCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAAAATGGTGAACCTAAACGGACCATCAGTTACATGGCAGAACGTGTTGTCGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAGTGTTTGGAGACTGGGGAGGCAGTGGCTATAAAAAAAGTCTTGCAAGACAGGCGGTACAAAAATCGTGAGCTGCAGTTAATGCGCTTGATGGATCACCCAAATGTAATTTCCCTGAAGCACTGTTTCTTCTCGACAACAAGCAGAGATGAACTTTTTCTGAACTTGGTAATGGAATATGTCCCTGAGACGATGTACCGAGTTTTAAAACACTACAATACTATGAACCAGAGAATGCCCCTCATCTATGTGAAACTATATACATATCAAATCTTTTGGGGATTAGCATATATACATACCGTACCGGGGGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCCCTTACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCTAAAGTTCTGGTCAAGGGGGAATCAAACATTTCATACATATGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTCGCTGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGATCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCAAATTATACAGATTTTAGATTTCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAACGAATGCCTCCAGAAGCAATTGACCTAGCATCAAGGCTTCTCCAATATTCACCTAGTCTTCGCTGCACTGCGCTGGAAGCATGTGCACACCCTTTCTTTGATGAGCTTCGTGAGCCAAATGCCCGACTACCTAATGGCCGCCCACTGCCGCCCCTTTTCAACTTTAAACAGGAATTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCACATTAGGAGGCAGACTGGTCTCGGCTTCCCTCATCCGGCTGGTACATAG 1266 0.4613 MASMPLGPNHHQPPLAVAPQPQQPPQFQAQAEVARRSSDVETDKFQEMSATVIEGNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGVVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYNTMNQRMPLIYVKLYTYQIFWGLAYIHTVPGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELAGASPELINRLIPEHIRRQTGLGFPHPAGT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi962g00004 421 Pfam Protein kinase domain 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi962g00004 421 ProSiteProfiles Protein kinase domain profile. 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi962g00004 421 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 46 410 - -
Gabi962g00004 421 SMART serkin_6 81 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi962g00004 421 Gene3D Transferase(Phosphotransferase) domain 1 161 408 - -
Gabi962g00004 421 SUPERFAMILY Protein kinase-like (PK-like) 80 389 IPR011009 -
Gabi962g00004 421 ProSitePatterns Protein kinases ATP-binding region signature. 87 111 IPR017441 GO:0005524
Gabi962g00004 421 FunFam Shaggy-related protein kinase kappa 161 408 - -
Gabi962g00004 421 MobiDBLite consensus disorder prediction 1 27 - -
Gabi962g00004 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Gabi962g00004 421 FunFam Glycogen synthase kinase-3 beta 65 160 - -
Gabi962g00004 421 CDD STKc_GSK3 76 368 IPR039192 -
Gabi962g00004 421 Gene3D Phosphorylase Kinase; domain 1 66 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi962g00004 Gabi-Chr962 31257 36521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi962g00004 85 403 MAP Kinase Gene Family AT3G59790 34.731 9.45e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gabi962g00004 Pkinase 6.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi962g00004 K14502 - gmx:100810924 779.63