Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi953g00012 ATGCCTCACAGAACCACTTACTTTTTCCCGCGTCAGTTCCCTGAGCGAGGATTGGATGAATCTTCGAAACAGTTATTAGATCACGAGAAGAACAAAATCGTCAACTCATTTAAATCGAATACTTTCGGCGTTGAAAGCGACCCTCCGAAAAAGCCACTTTCATCATCAACTACTCCTGCTGATCCAACCAAAGACGACGTCGTTGTCTCGTCAGGTAAGAACTCGTTAGAATCCGACCTTTTCGCCGCCGGTGACAAGTTTCGAACCAAACACAACCAAATTGCAGCTTTCTGCGATTGGTTGGTCGACAAAAAAGGACATCAATCCAGTCACCACCTCAAACCTTATTCCCGCCACCACCGCCGCTTGTTCAACTCCGAGGAGGACCGCGACCTTAACGTCAAGGAAACTTCCGTCGACCGGAGTTTTGACCGGCAGGTTTCGCTTCAGAGGTTATCGAGCGGGAGTAGCTATGCAGGGAGCTTGTTTTCGGGGACGACGTTGGATGGCAATTTTTCCAGCGACATTAAGGAGGAAACGTCGTCGTCTGGGGTCTCCACCACCACAGCGAGGAGGCAGCATGAGGAAGAAAACAAAGAGCAGTTAGCGAACAAGTGTAAAGAAAGCTACATCTTGCAGCTTACGTTGGCAAAGAAACTCACTTGTTTGGCTAATCTCGTGACTGAGCCTGTTCTCACTGGGACCACTGAGACCTGGGATGATGAATCTGTTTCTTATCGTCTATGGGTGAGTGGGTGCTTGTCGTATTCGGACAAGATATCTGATGGTTTTTATAACATATTGGGGATGAATCCGTATCTGTGGGGGATGTGCAATGATGTAGAGGAAGGTAGGCGGATACCTACTTTGATAGCGCTTAAAGCTGTTGAACCCAGCGAGACATCTATGGAGGTGGTGCTTGTTGATAGACACGTGGACTCTCGGCTGAAGCTGCTTCAAGATAAAGCACAAGAGTTGTATTCTGCTTCCGAGAACACCTTGGTGTTGGTGGAACAACTAGGAAAACTTGTTGCTATATATATGGGGGGTACATTCCCGGAGGAGCAAGGAGATCTCCACAAGCGCTGGAATATGGTTAGTAAGAGGTTGAGGAATTTTCACAATTGTGTTGTGCTTCCCATTGGTAGCCTATCTACTGGGCTTTGTAGGCATCGGGCGATTCTCTTCAAGAGATTGGCAGATTACATAGGTTTGCCGTGTCGCATAGCTCGAGGTTGCAAGTATTGTGCTGCAGATCATAGATCCTCTTGTCTAGTCCAGATTAAAGACGACAAGCAGCTCCCAAGGGAATACGTAGTCGACCTAGTTGGGGAACCAGGAAATATCCATGGGCCCGATTCCTCAATTAACGGAGCATATATTTCTTCGATGCCTTCACCATTTCAAATTTCTCATTTAAAAGAATCACAATCACCTTATATGGATGGTGCAACAAATTCTCCATCTATACGTTTCAACCGGAGTTCTGTTATTCCTGGAAGTCATCCACATTCAGACTATGGACATAAAGATCAACAAGTTAAAGAAACTGATTTGCTGAAAAATCATAAGGGCTCCATTTATGCTTCAGTTGATCAGACCTGTGAAGGAACAGAACTACCTGTAATTCCTTTTGGTTTAAAAGGGAATAATGAGGAATGTGCAGTTCTAGGTTCAATTTTGCCTACCATCCATGAAGATGTTTCTAAAGCTCACCATCCAACCACTAAAGCATCATTACATGAATATCCCAGACTTGTTGAAGATGCAGTTGTAGTGCAAGAAACTTCCAACAATGACATCATCGTAACTGGATGTTCTGTGGTAAAATGTACTTTCAAACAATCTGTACTCAGTTCATCCTGCCAGTCCGATCCGAAACAGGTAGACAAAAGAATTGAAAACCAGAACTGTTTACCAGCTGGGAATATTCCCAAATTTCTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGAATCAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACAGTGCACTGTGCTGAATGGCATGGATCAGATGTTGCTGTCAAGGTTTTAACAGATCAGGATTTCCATGATGATCAGTTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGCCCCCACCTGTCGATAGTGACAGAGTATTTGCCTAGAGGTAGTTTATACCGCCTGATACATAGGCCAGCACCTGGCGAAATTTTGGATCATCGAAGAAGATTACGGATGGCTTTGGATGTGGCTAAAGGGATCAATTACCTCCATTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAATCCCCAAACTTGTTAGTGGACAAGAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATATCATCAAAATCTGTTGCTGGAACACCTGAATGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCCTGTGGGAACTTGTGACCATGCAACAACCATGGAGTGGACTTAGCCCTGCGCAGGTGGTTGGAGCTGTTGCTTTTCAGAACAGGAGGCTTGTTATCCCTGCGAACATCTCCCCAGTATTGGTCTCCCTCATGGAATCTTGTTGGGCTGATGACCCTGATCAACGCCCATCTTTTGCTAGCATAGTTGAGTCACTAAAGAAGCTGCTGAAGTCTCCAGCAGAGAAGATAAAAATGAGTGATACATAA 2811 0.4475 MPHRTTYFFPRQFPERGLDESSKQLLDHEKNKIVNSFKSNTFGVESDPPKKPLSSSTTPADPTKDDVVVSSGKNSLESDLFAAGDKFRTKHNQIAAFCDWLVDKKGHQSSHHLKPYSRHHRRLFNSEEDRDLNVKETSVDRSFDRQVSLQRLSSGSSYAGSLFSGTTLDGNFSSDIKEETSSSGVSTTTARRQHEEENKEQLANKCKESYILQLTLAKKLTCLANLVTEPVLTGTTETWDDESVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWGMCNDVEEGRRIPTLIALKAVEPSETSMEVVLVDRHVDSRLKLLQDKAQELYSASENTLVLVEQLGKLVAIYMGGTFPEEQGDLHKRWNMVSKRLRNFHNCVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVQIKDDKQLPREYVVDLVGEPGNIHGPDSSINGAYISSMPSPFQISHLKESQSPYMDGATNSPSIRFNRSSVIPGSHPHSDYGHKDQQVKETDLLKNHKGSIYASVDQTCEGTELPVIPFGLKGNNEECAVLGSILPTIHEDVSKAHHPTTKASLHEYPRLVEDAVVVQETSNNDIIVTGCSVVKCTFKQSVLSSSCQSDPKQVDKRIENQNCLPAGNIPKFLNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHCAEWHGSDVAVKVLTDQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPAPGEILDHRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQVVGAVAFQNRRLVIPANISPVLVSLMESCWADDPDQRPSFASIVESLKKLLKSPAEKIKMSDT 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi953g00012 936 SMART serkin_6 666 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi953g00012 936 Gene3D Transferase(Phosphotransferase) domain 1 745 934 - -
Gabi953g00012 936 MobiDBLite consensus disorder prediction 50 71 - -
Gabi953g00012 936 ProSiteProfiles Protein kinase domain profile. 666 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi953g00012 936 MobiDBLite consensus disorder prediction 37 71 - -
Gabi953g00012 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Gabi953g00012 936 MobiDBLite consensus disorder prediction 174 189 - -
Gabi953g00012 936 Pfam Ethylene-responsive protein kinase Le-CTR1 242 449 - -
Gabi953g00012 936 ProSitePatterns Protein kinases ATP-binding region signature. 672 693 IPR017441 GO:0005524
Gabi953g00012 936 Coils Coil 185 205 - -
Gabi953g00012 936 PRINTS Tyrosine kinase catalytic domain signature 740 753 IPR001245 GO:0004672|GO:0006468
Gabi953g00012 936 PRINTS Tyrosine kinase catalytic domain signature 891 913 IPR001245 GO:0004672|GO:0006468
Gabi953g00012 936 PRINTS Tyrosine kinase catalytic domain signature 847 869 IPR001245 GO:0004672|GO:0006468
Gabi953g00012 936 PRINTS Tyrosine kinase catalytic domain signature 781 799 IPR001245 GO:0004672|GO:0006468
Gabi953g00012 936 Gene3D Phosphorylase Kinase; domain 1 659 743 - -
Gabi953g00012 936 FunFam Serine/threonine-protein kinase isoform 1 656 744 - -
Gabi953g00012 936 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 191 925 - -
Gabi953g00012 936 FunFam Serine/threonine-protein kinase CTR1 745 930 - -
Gabi953g00012 936 MobiDBLite consensus disorder prediction 174 200 - -
Gabi953g00012 936 Pfam Protein tyrosine and serine/threonine kinase 666 920 IPR001245 GO:0004672|GO:0006468
Gabi953g00012 936 SUPERFAMILY Protein kinase-like (PK-like) 645 919 IPR011009 -
Gabi953g00012 936 CDD STKc_MAP3K-like 672 920 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi953g00012 Gabi-Chr953 117420 125415 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi953g00012 1 933 MAP Kinase Kinase Kinase AT4G24480 56.224 0.0 1041
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi953g00012 PK_Tyr_Ser-Thr 2.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi953g00012 - - gmx:100808435 1466.83