Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi941g00003 ATGGCGAAGGAATTATTGGTTAATGCCTCACTCATCCCAGCATCTCAGTTGCTTTCCCAGACCATCTTTGCTATATTTGATACTGTCAAAGCGGCCAATGAGGTTGCTATTCATAAGGAAAATTTCAAGAAATTCTCTATTCACTTGGAAAAGATCTCATTTATATTGAAGTCTTTATCAAAGGAAGGCATGCACAATCCTGAGAGCTTGGAAAATGCTGTGAATGTTCTCAACCGAGAGGTTAAAGTTGCTAAGCAGCTGGTTTTTGAGTGCAGCAGTAGAAGTAAGGTTTATCTTTTAATCAATTCCAGAAGGATTGTTACACGCTTGAAGTGTTGTGTGAAAGATATAAGTGGAGCAGTAAGCCTTATCGCTCTGGCTTCTTTGGACATTAACTCTGGTTTAAATCAACTGATAAGTGAGTTGTGCCAGAACATGTTAGATGCTGAGTACGAAACAGCTGCAGCCGATGAAAAAATCTTGGAAAAAATTGAGATAGCAATACAAGAGGGAAATGTTGATCGATCATTTGCAAATCAGTTGCTAGCTTGTATTGCAGATGCCATTGGGGTCTCCATAGAGCATGCTTCTTTGAAGAGAGAATTTGAAGAGCTGAAAAATGAAATGGAAAAAGCCAAGTCTAGGAAGGATACGGGGGAAGCTCTACATATGGAGCAGATTATTGCAGTACTTGAAAAGGCTGATTCCATAACTTCAGCACAAGAGAAGGAAAAGAAGTATCTTGAAAGGAGAAATTCTTTAGGAAGGAGACCATTGATGCCTCTGCAATCATTTTACTGCCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACTTCTACTGGCAAGACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGCTGAAGGGAACAATCACTGTCCCTTGACTATGTTGCCTCTGGATACTTCAATCCTAAGGCCCAACAAGACTCTTAAGCAGTCTATTCAAGAATGGAAAGACAGGAACACAATCATTACCATTGCAAATATCAAATCCAAACTTGAAACAAATGAAGAAGAGGAAGTGCTCCAATCCTTAGACATATTGCAGGACTTATGCTTAGAAAGAGAGATACACCGAGAATGGTTAAAAATGGAGAATTACTTTGCTGTTCTTATTGGACTTCTTGGTTCTAAAAATCGTGAAATAAGGAAGCGTGTTCTGCTCATCCTGTCTGTGCTTGCACATGATAATGCAGAGAGCAAGGAAGATATTGCTAAAGTGGATAATGCACTTGGATCAATTGTTCGCTCACTTTCACGTCAAATTGGGGAAAGCAAGTTAGCATTGGAGTTGCTGTTGGAGTTGTCTAAAAGTAAAACGGTGTGCAATCTCGTAGGAAACATTCAAGGAAGTATACTTCTCCTGGTGACGATGTTAAACAGTGATGATGTTGAAGCAGCCAAAAATGCACATGAGTTGCTGGAGAACCTCTCTTTCCTTGTGCAGAATGTTATACAGATGGCAAAGGCAAATTATCTTAAGCCTTTACTGCTGAACCTTTCTACAGGACCAGAAAATATGAAGATAGTCATGACTGAAACTTTGTCGGAAATTGAGTTGACCGACCAGAAGAAAATTTTCTTGGTAAAAAATGGGGTACTGCTGCCTCTTCTTCAGCTGCTCTTAAATAATGACGTGGAAATCAAGAAAGTGGTTGTCAAAGCTCTACTACAGCTCTCAAGCTTACCAGAGAATGGCCTGCAGATGATTAAGGAAGGTGTTGTTCAACCACTATTGGAATTGCTATACAGTCAGAGTTTGCAGTCACCTACTCTGCTTGAACAGGTTGTTGCCACAATAATGCATCTTGCCATATCAACCACTCACCCACAAGCTGAAGCAGAACAGGTTTCACTCTTAGGTTCTGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACGGAACCAGAGATACAAAACAAGATTCTCAAAGTTTTCCATGCACTGTGTCAATCTTTATCTGGCTTCCCCATCAGAAAGAAATTGAGACAGATCTCAGCTGCTAAAGTATTGGTCCACTTGTTAGAGCTTAATACCCGAACAGTGAGAGTAAATGCCTTGAAGCTTTTCTATTGTTTGACAGAAGACGGTGATTACAGCAACTTCTCATCAAATATAACTGAAAGATTCATTAAAGTATTGCTTACCATCATTGAGGCTTCTGATGATGCAGAAGAGATGCTTACTGCCATGGGTATCATCTCTAAACTACCACAGGAGTCTCACATAACCCAGTGGCTTCTAGATTCTGGGGCAGTTCAAACTATTTTGGCTAGTCTTACGGACCAACATAAACATGCCTCACACAAAAATCAAGTTATAGAGAACTCTGTTCAAGCTCTTTGTCGTTTTACTGTCTCAACAAATCTGGAGTGGCAGAAGAGAGTAGCTGAAGAAGGCATAATCCCGGTGCTGGTGCAATTACTGGTTTCTGGAACCCCTTTTTCCAAACAAAATGCAGCCATTTCAATCAAGCAGTTTTCAGAAAGTTCATATCAGTTGAGCAAGGCAATAAAGAAGCCGGGTATTTTCAAAAGCTGCTTTATAGCCCATGAAACTGGTTGCCCAGCACACCTAGGCACCTGCACAGTTGAGTCTTCATTCTGCATTTTACAGGCTAATGCTTTGGAGCCCCTTGTGCGGATGCTAGCAGAGCAAGATGTCGGAACATGTGAAGCTTCCTTAGATGCATTATTGACTTTGCTTAATGGTGAAGCACTACAGAGTGGAAGTAAGGTACTTGCAGATGCAAATGCTATTACACCAATGATAAAACTATTGAGTCTTCCAGCTACCAGGTTGCAGGAAAAAACTCTAATAGCTTTAGAACAAATATTTCAACTAGATGAAGTGAAAAATAAGTACAAATCTATGGCCACAATGCCCTTGGTAGACATAACTCAGATGAAAGATAGCCGTTTGAGAACTCTTGCTGCCAAAGGCCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 3024 0.4024 MAKELLVNASLIPASQLLSQTIFAIFDTVKAANEVAIHKENFKKFSIHLEKISFILKSLSKEGMHNPESLENAVNVLNREVKVAKQLVFECSSRSKVYLLINSRRIVTRLKCCVKDISGAVSLIALASLDINSGLNQLISELCQNMLDAEYETAAADEKILEKIEIAIQEGNVDRSFANQLLACIADAIGVSIEHASLKREFEELKNEMEKAKSRKDTGEALHMEQIIAVLEKADSITSAQEKEKKYLERRNSLGRRPLMPLQSFYCPISLDIMVDPVETSTGKTFERSAIEKWFAEGNNHCPLTMLPLDTSILRPNKTLKQSIQEWKDRNTIITIANIKSKLETNEEEEVLQSLDILQDLCLEREIHREWLKMENYFAVLIGLLGSKNREIRKRVLLILSVLAHDNAESKEDIAKVDNALGSIVRSLSRQIGESKLALELLLELSKSKTVCNLVGNIQGSILLLVTMLNSDDVEAAKNAHELLENLSFLVQNVIQMAKANYLKPLLLNLSTGPENMKIVMTETLSEIELTDQKKIFLVKNGVLLPLLQLLLNNDVEIKKVVVKALLQLSSLPENGLQMIKEGVVQPLLELLYSQSLQSPTLLEQVVATIMHLAISTTHPQAEAEQVSLLGSEEDIFKFFSLISLTEPEIQNKILKVFHALCQSLSGFPIRKKLRQISAAKVLVHLLELNTRTVRVNALKLFYCLTEDGDYSNFSSNITERFIKVLLTIIEASDDAEEMLTAMGIISKLPQESHITQWLLDSGAVQTILASLTDQHKHASHKNQVIENSVQALCRFTVSTNLEWQKRVAEEGIIPVLVQLLVSGTPFSKQNAAISIKQFSESSYQLSKAIKKPGIFKSCFIAHETGCPAHLGTCTVESSFCILQANALEPLVRMLAEQDVGTCEASLDALLTLLNGEALQSGSKVLADANAITPMIKLLSLPATRLQEKTLIALEQIFQLDEVKNKYKSMATMPLVDITQMKDSRLRTLAAKGLAQLGVLDKQSSYF 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi941g00003 1007 Gene3D - 435 860 IPR011989 -
Gabi941g00003 1007 Pfam MCAfunc domain 29 160 IPR045766 -
Gabi941g00003 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 15 1007 - -
Gabi941g00003 1007 Gene3D - 336 434 IPR011989 -
Gabi941g00003 1007 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Gabi941g00003 1007 SUPERFAMILY RING/U-box 257 333 - -
Gabi941g00003 1007 Coils Coil 195 222 - -
Gabi941g00003 1007 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Gabi941g00003 1007 SUPERFAMILY ARM repeat 504 960 IPR016024 -
Gabi941g00003 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 335 IPR013083 -
Gabi941g00003 1007 CDD RING-Ubox_PUB 265 314 IPR045210 -
Gabi941g00003 1007 SUPERFAMILY ARM repeat 335 525 IPR016024 -
Gabi941g00003 1007 Gene3D - 866 1004 IPR011989 -
Gabi941g00003 1007 SMART arm_5 752 798 IPR000225 GO:0005515
Gabi941g00003 1007 SMART arm_5 531 571 IPR000225 GO:0005515
Gabi941g00003 1007 SMART arm_5 875 915 IPR000225 GO:0005515
Gabi941g00003 1007 SMART arm_5 572 615 IPR000225 GO:0005515
Gabi941g00003 1007 SMART arm_5 919 959 IPR000225 GO:0005515
Gabi941g00003 1007 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Gabi941g00003 1007 Gene3D - 16 128 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi941g00003 Gabi-Chr941 27762 33056 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi941g00003 263 1007 U-box Gene Family AT1G20780 28.390 1.19e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi941g00003 - - gmx:100818273 1498.41