Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi93g00006 ATGGCTTTTCCAAACCAATCCATGTCAGTTTCTCCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATTAAGCGGATTGAGAACACCACCAATCGCCAAGTTACCTTCTGCAAGCGCAGAAATGGCCTTCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGACGCAGAGGTTGCTCTAATTGTCTTCTCTACCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGCGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAACAAGAAGCAGACAAATTGCGTGCGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCAGTATGAATGCCAAGGAACTCAAAAACCTGGAGACCAAATTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAACGAGCTGCTATTTGCCGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAATAACCACCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACCATAACATGAACGTGTTGCCTGGAGGCACAAACTATGACTCTATGCAGTCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCACGGCAAGACCAGATGTCCCTTCAATTAGTGTAA 729 0.4348 MAFPNQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNHLLRAKIAESERSHHNMNVLPGGTNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi93g00006 242 CDD MADS_MEF2_like 17 86 IPR033896 GO:0000977|GO:0045944
Gabi93g00006 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 200 - -
Gabi93g00006 242 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Gabi93g00006 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Gabi93g00006 242 Coils Coil 139 159 - -
Gabi93g00006 242 Coils Coil 102 129 - -
Gabi93g00006 242 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi93g00006 242 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Gabi93g00006 242 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Gabi93g00006 242 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi93g00006 242 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi93g00006 Gabi-Chr93 47724 55352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi93g00006 14 242 MADS-box Gene Family AT3G58780 68.936 7.52e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi93g00006 K-box 5.6e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi93g00006 K09264 - gmx:732595 434.491