Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi93g00005 ATGTCAGTTTCTCCACAGAGAAAGATGGGAAGGGGGAAGATTGAGATTAAGCGGATTGAGAACACCACCAATCGCCAAGTTACCTTCTGCAAGCGCAGAAATGGCCTTCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGACGCAGAGGTTGCTCTAATTGTCTTCTCTACCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCTTCTGGCGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAACAAGAAGCAGACAAATTGCGTGCGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGCAGTATGAATGCCAAGGAACTCAAAAACCTGGAGACCAAATTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAACGAGCTGCTATTTGCCGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAATAATAACCACCTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACCATAACATGAACGTGTTGCCTGGAGGCACAAACTATGACTCTATGCAGTCTCAGCAGCAATTTGACTCTCGTGGCTACTTCCAAGTGACTGGATTACAACCCAATAATCAGTATGCACGGCAAGACCAGATGTCCCTTCAATTAGTGTAA 708 0.435 MSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQMMGESLGSMNAKELKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNHLLRAKIAESERSHHNMNVLPGGTNYDSMQSQQQFDSRGYFQVTGLQPNNQYARQDQMSLQLV 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi93g00005 235 CDD MADS_MEF2_like 10 79 IPR033896 GO:0000977|GO:0045944
Gabi93g00005 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 9 193 - -
Gabi93g00005 235 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 Pfam K-box region 93 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi93g00005 235 Gene3D - 21 87 IPR036879 GO:0003677|GO:0046983
Gabi93g00005 235 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 Coils Coil 132 152 - -
Gabi93g00005 235 Coils Coil 95 122 - -
Gabi93g00005 235 SUPERFAMILY SRF-like 10 81 IPR036879 GO:0003677|GO:0046983
Gabi93g00005 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi93g00005 235 FunFam agamous-like MADS-box protein AGL11 21 104 - -
Gabi93g00005 235 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Gabi93g00005 235 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi93g00005 Gabi-Chr93 47724 60351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi93g00005 7 235 MADS-box Gene Family AT3G58780 68.936 7.46e-111 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi93g00005 K-box 5.2e-28 No_clan