Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi939g00020 ATGGATTGGACTAAGAGCACAAGAACCTTTGATCCTCTAGCAGAGTCTTCCTTAAGCTTCCTCTACAACTATAACAACAACCCATATCCAGGAATGGAAGTGAAACAACAGGCATTGGCCGAGACATCACAAATGTTGCACCCCACAATGGACAAAATGAACCGTGGAAACCGGGAGAAGAAGAAGCGGTTAACAAGTAACCAGAGTGAGTTACTGGAAAGGAGTTTCCAGGAGGATATAAAGTTGGACCCTGAAAAGAAGATGAAGCTTTCAAGGGATCTAGGGCTCCACCCTCGCCAGATTGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGACCAAGCAGCTTGAACACTTGTACGATGTTCTTAAACAGGAATTTTGCCTCATCTCGAAAGAAAACCAAAAGCTTCAAGAAGAGGTTATAAATTTGAAGGCAAGGCTCGGAGAGCAAGCTTTTAGGACGCAAACATTTGCTGGTTACACAGAAATCTCTGCGGAAGAAACAGTAGAAAGCACGTCAGAGGCGCTACGTGGTTCCAACAAGCCACAGGAAACGAGTAACTTTGAGAAGGTTGAAGAGGGTTACTGTTCTTTTACTGTGGAGGATTATAACACTGTCTCACTGCCTCTCTGCCACTGGTCAATTGTGCCTCATTATCCCTAA 669 0.4439 MDWTKSTRTFDPLAESSLSFLYNYNNNPYPGMEVKQQALAETSQMLHPTMDKMNRGNREKKKRLTSNQSELLERSFQEDIKLDPEKKMKLSRDLGLHPRQIAVWFQNRRTRWKTKQLEHLYDVLKQEFCLISKENQKLQEEVINLKARLGEQAFRTQTFAGYTEISAEETVESTSEALRGSNKPQETSNFEKVEEGYCSFTVEDYNTVSLPLCHWSIVPHYP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi939g00020 222 Pfam Homeodomain 58 113 IPR001356 GO:0003677
Gabi939g00020 222 SMART HOX_1 57 119 IPR001356 GO:0003677
Gabi939g00020 222 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 51 184 IPR045224 GO:0003700
Gabi939g00020 222 SUPERFAMILY Homeodomain-like 44 117 IPR009057 -
Gabi939g00020 222 CDD homeodomain 58 116 IPR001356 GO:0003677
Gabi939g00020 222 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981|GO:0006355
Gabi939g00020 222 Gene3D - 49 122 - -
Gabi939g00020 222 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677
Gabi939g00020 222 Pfam Homeobox associated leucine zipper 115 149 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi939g00020 Gabi-Chr939 176373 178173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi939g00020 16 145 Homeobox Transcription Factor Family AT5G03790 49.275 1.26e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi939g00020 Homeodomain 7.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi939g00020 - - vra:106757543 271.937