Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi939g00011 ATGATTGCTGAATCAAACATGAGACCGAGCTTCCATCTTAGATATGCCTTTCTTCTTTTCCTTTCCTTCCTTGGTCATTATACTTCTTCACAAAAGACTTGTCCAAACTGTGGCTCTATGCAAGTTCCATATCCTTTGAGCACAGAACCAAGTTGTGGTGATCCATACTATAAGCTTCGTTGTGATTCCCACTCTCAAAGGCTTTACTTTGACACCCTCAATGGCAGTTCCTATCTAATACTCAGAATCATGTCTTCAATTCAGCGCATGGTGATACAACCATCACCTTGGTTACCTGGTTCATGTGTTACACAAGACATGCCGGCAAGCCATGGTATTTGGTTAAATCAGTCACTACCTTTCAACATAACTTCATCCAACACAGTATTCCTCTTTAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGCACTTCTTCTAGTATTTGCCATCGTTACTTGGAGAGTTCAGGTCATGTTGACAAAACACTAGCACTTGAATGTGCAAGTGGTCTTCACCCTTGTTGCACCTTTGTTGCTGGTGGGGTACCTTCAGGTTACAGGATTAGGCTTCACAACTCTGGTTGCAAAGCCCTCAGAAGCATCCTTCATTTGGATGAAGAGAAGCCTCCTAATCAGTGGGATGAAGGCCTTGAAATTCAATGGGCTCCACCACCTGAACCAGTTTGCAGGACACAAAGGGATTGCTCTGGAGACTCCAAGTGTTCCCCTGCTGGTAGAAATGGCCTCTTTCGCTGTCTTTGTAATGGGGGACACCATTGGGACCCTTTTGTAGCAACCTGCCTGAGGTATAAGAGAAAATCCAAATGGAAAACCAGCTTGGTGGCTTCAATAGGGGTTGTTACTTTTTTCTCTCTAGCTCTAGTTCTAGCCATCATCACAAGATCATGCAAACTCTCTAGCTATAGGGAGAAGCAGACCAAGGAAAAAGAAAGCATGCTGAAATCAAGAGCTGGGGAGAAACCTTATAGGATGTTTCAACTGAAAGAGGTGAATAAAGCAACAAATGGTTTTTCTCAAGACAGGTTCTTAGGGAGTGGTGGCTTTGGGGAAGTTTACAAAGGTGAACTACAAGATGGAACACTTGTGGCTGTCAAGAAAGCTAGAGTGGGTAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTTTCTGAAGTCAATCACAAGAACTTAGTAAAACTCTTGGGATGCTGTATGGAATCTGAACAGCCATTAATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGCAGGTTTTCCAAAATCAACTTTCTAGATTGGAAAACAAGGCTTAAGGTTGCTTTTCAAACAGCTGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCAATCTACCATAGAGATGTCAAGTCAACAAATATACTATTGGATGATGAATTCAACACCAAAGTCTCAGATTTTGGGCTCTCTAGATTGGCTAACCCGGGACTTAGTCATGTGTCAACATGTGCTCAGGGAACACTGGGGTACTTGGATCCTGAATATTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTTGTGTTGCTTGAGCTTTTGACTTCACAGAAAGCAATAGACTTCTCTCGTGAACAAGATGATGTCAACCTAGCAATTCATGTGAGTCAACATGCCATCAATGGTACAATCATGGAAGTTGTAGATCAAAGTCTTCTTTCCATGGATCCCTTTGGTGATAAAATGATCACAAGCATAAAACTCTTCTCGGAGCTTGCACTTGATTGTCTGAGGGAAAAGAAAGGTGAAAGGCCTAGTATGAGGGATATTGTTCTACGCCTCCTATGCATAATTAGGATTATGGATCAAGAGTGA 1899 0.4234 MIAESNMRPSFHLRYAFLLFLSFLGHYTSSQKTCPNCGSMQVPYPLSTEPSCGDPYYKLRCDSHSQRLYFDTLNGSSYLILRIMSSIQRMVIQPSPWLPGSCVTQDMPASHGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLESSGHVDKTLALECASGLHPCCTFVAGGVPSGYRIRLHNSGCKALRSILHLDEEKPPNQWDEGLEIQWAPPPEPVCRTQRDCSGDSKCSPAGRNGLFRCLCNGGHHWDPFVATCLRYKRKSKWKTSLVASIGVVTFFSLALVLAIITRSCKLSSYREKQTKEKESMLKSRAGEKPYRMFQLKEVNKATNGFSQDRFLGSGGFGEVYKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSEVNHKNLVKLLGCCMESEQPLMIYEYISNGTLYDHLHGRFSKINFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDVKSTNILLDDEFNTKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFSREQDDVNLAIHVSQHAINGTIMEVVDQSLLSMDPFGDKMITSIKLFSELALDCLREKKGERPSMRDIVLRLLCIIRIMDQE 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi939g00011 632 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi939g00011 632 CDD STKc_IRAK 352 622 - -
Gabi939g00011 632 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Gabi939g00011 632 Pfam Protein kinase domain 347 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi939g00011 632 SUPERFAMILY Protein kinase-like (PK-like) 324 622 IPR011009 -
Gabi939g00011 632 Gene3D Transferase(Phosphotransferase) domain 1 422 631 - -
Gabi939g00011 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gabi939g00011 632 Pfam Wall-associated receptor kinase galacturonan-binding 34 91 IPR025287 GO:0030247
Gabi939g00011 632 Gene3D Phosphorylase Kinase; domain 1 305 421 - -
Gabi939g00011 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 624 IPR044652 GO:0004672
Gabi939g00011 632 FunFam Wall-associated receptor kinase-like 20 422 632 - -
Gabi939g00011 632 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 318 421 - -
Gabi939g00011 632 SMART serkin_6 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi939g00011 Gabi-Chr939 100706 102604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi939g00011 34 632 Receptor kinase-like Gene Family AT5G02070 46.571 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gabi939g00011 Pkinase 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi939g00011 - - gmx:100804678 1109.75