Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi939g00009 ATGGCGGTTTCTACGACGGTCGCCGCCGCTTCGGCGTCTCTTTACGTCGGCGACCTCCACCCCGACGTCACCGAAGGCCAGCTGAAGGACGCGTTCTCCGATTGCATTGGCCGTGATTCCGTTCGCCTTTGCAAGGACACGGCAACCGGCAGGTCCCTCTGTTATGGCTATGTCAACTTCGTTTCTCATCAAGACGCGATTCGTGCAATCGAGTTGAAGAATAATTCTATGCTGAATGGAAAAGCGATGAGGGTCATGTGGTCGCGTCGTGATCCTGATGCAAGGAAAAGTAACATAGGGAACGTGTTTGTCAAGAACTTAGCTGAATCAATACACAATGCGGCACTACAAGATTTATTTAAAAAATATGGGAATATTGTGTCCAGCAAAGTTGTCATCTCTGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAATCTGCAAATACTGCCATCGAGAAGCTGAATGGCTCTACTATTGGTGATAAGCAGATATATGTTGGCAAGTTTGTCAAAAAGTGTGACCGCATATTGCCTGGCCCTGATGCCAGATATACAAACTTGTACGTGAAGAATTTGGACCCAGATATTACAGAAGCACTTCTGCAGGAAAAGTTTTCCCCTTTTGGCAAAATTGTTAGCTTGGCTATTGCAAAGGACAACAACGGGATGTCAAAGGGTTTTGGCTTCGTGAACTATGACAACCCAGATGATGCTAAAAGGGCGATGGAAGCAACAAGTGGATCACAATTTGGTTCAAAGATTCTGTATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCATCAATTTGAGGAGAAACGTAAGGAACAAATCTTGAAATATAAGGGATCAAACGTTTATGTGAAGAACATTGATGACAATGTTAGTGATGAAGAAATGCGAGATCATTTTAGTGCATGTGGCACAATTACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGCAAAGGGTTTGGTTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACTTTTCATGGATTCATGTTTCATCGCAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGCAAGCACAGTTGCAGCTCCAGTACGCACAGCAAATAGCAGGACTATCTGGACCTTCAACTACCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTGTTTCACATGGGCCTCCTCGTGCTGGGCTGATGTATCAACCTCTGGCAATGAGGACGGGATGGAGGGCTAATGGCTTTGCACCTCCTGCTAGACCATTTCAACAATCACCAGCTCCTGTTGTTTCTAACAATACAAGGCAGCATAGGCAAAACCGGGGCAGGATGAATGGGCATACAATTTCTCAGGGAAATAATCATTCTGGTACCCAGCAGAATTCTCAGTCAGTGATCTCGTCAAGAGAGTCAAATACTCAGCAGCGAACAGGACAGGCTAAGTACGTACCTAGTGGACGCCTACGTGAGATGGAAAAAGGATCTGGATTCTCATCTGCTGGTTCTAACTCTGGTGGTGGATCCCAGGGATTAGAAATGCTGCATAGCATGCTTGCTTCTGCTACTCCTCAGCTTCAGAAAGATATACTCGGCGAGCATATTTACTTGATTGTAGAGAAACTCAAGCCTAGCCTATCAAGAAAGATTACAGGGATGCTTTTGGAGATGGACAATGACGAATTGCTGGTTCTCCTGGAATCACCCGAGTCTCTTTCTGCTAAGGTGGAAGAAGCTGTGCAAGTGCTCAAGAACTCAAAGACAAAAGTTTCTGGCCAGGATGTACTTCATTCAAATTACCTTTCAGCTGGTGTAGCAGTGAGCTGA 1893 0.4532 MAVSTTVAAASASLYVGDLHPDVTEGQLKDAFSDCIGRDSVRLCKDTATGRSLCYGYVNFVSHQDAIRAIELKNNSMLNGKAMRVMWSRRDPDARKSNIGNVFVKNLAESIHNAALQDLFKKYGNIVSSKVVISEDGKSKGYGFVQFESEESANTAIEKLNGSTIGDKQIYVGKFVKKCDRILPGPDARYTNLYVKNLDPDITEALLQEKFSPFGKIVSLAIAKDNNGMSKGFGFVNYDNPDDAKRAMEATSGSQFGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNVYVKNIDDNVSDEEMRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHRKPLYVALAQRKEDRQAQLQLQYAQQIAGLSGPSTTIIPGGYPPYYYAATGVVSHGPPRAGLMYQPLAMRTGWRANGFAPPARPFQQSPAPVVSNNTRQHRQNRGRMNGHTISQGNNHSGTQQNSQSVISSRESNTQQRTGQAKYVPSGRLREMEKGSGFSSAGSNSGGGSQGLEMLHSMLASATPQLQKDILGEHIYLIVEKLKPSLSRKITGMLLEMDNDELLVLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNYLSAGVAVS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi939g00009 630 CDD RRM2_I_PABPs 99 174 IPR045305 -
Gabi939g00009 630 FunFam Polyadenylate-binding protein 4 99 - -
Gabi939g00009 630 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 533 610 IPR002004 GO:0003723
Gabi939g00009 630 Coils Coil 263 283 - -
Gabi939g00009 630 Gene3D - 275 380 IPR012677 -
Gabi939g00009 630 FunFam Polyadenylate-binding protein 182 276 - -
Gabi939g00009 630 Gene3D - 532 624 - -
Gabi939g00009 630 CDD RRM4_I_PABPs 293 371 - -
Gabi939g00009 630 MobiDBLite consensus disorder prediction 438 531 - -
Gabi939g00009 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gabi939g00009 630 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gabi939g00009 630 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gabi939g00009 630 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gabi939g00009 630 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gabi939g00009 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gabi939g00009 630 Pfam Poly-adenylate binding protein, unique domain 540 605 IPR002004 GO:0003723
Gabi939g00009 630 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gabi939g00009 630 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gabi939g00009 630 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gabi939g00009 630 MobiDBLite consensus disorder prediction 448 504 - -
Gabi939g00009 630 Gene3D - 180 274 IPR012677 -
Gabi939g00009 630 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Gabi939g00009 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gabi939g00009 630 FunFam Polyadenylate-binding protein 101 181 - -
Gabi939g00009 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gabi939g00009 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gabi939g00009 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Gabi939g00009 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Gabi939g00009 630 Gene3D - 101 179 IPR012677 -
Gabi939g00009 630 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 606 IPR006515 GO:0003723
Gabi939g00009 630 Gene3D - 4 100 IPR012677 -
Gabi939g00009 630 PANTHER RNA BINDING PROTEIN 11 74 - -
Gabi939g00009 630 SMART poly_2 545 608 IPR002004 GO:0003723
Gabi939g00009 630 SUPERFAMILY RNA-binding domain, RBD 11 94 IPR035979 GO:0003676
Gabi939g00009 630 FunFam Polyadenylate-binding protein 277 385 - -
Gabi939g00009 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gabi939g00009 630 SUPERFAMILY RNA-binding domain, RBD 291 385 IPR035979 GO:0003676
Gabi939g00009 630 SUPERFAMILY PABC (PABP) domain 537 616 IPR036053 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi939g00009 Gabi-Chr939 79502 83625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi939g00009 11 628 Eukaryotic Initiation Factors Gene Family AT2G36660 52.894 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi939g00009 K13126 - gmx:100779547 1009.98