Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi939g00003 ATGGACGACAAGGAAGCCAAACACGGATCCTTTGTCACCCCTCTTGTTATCTCCGCTGCTGGCATTATATGCTCCACTCTAGCAATAGCAGCGTACCATTTCATTCTCCTGAGGTATTTCCTCAGGCCTCACAGAGTACAACGTAGGAACAACAGAAACCGCATCAAAAAAAGTGGCGGGGTCCAAGAAGAAATTCTCAACAAGATCCCCATTCTCTCTTACTCAACTCTTAAAAACGAAGTCTTTCCTTTGGACCATAATGAATGTTCCATTTGCCTTGGCGAATTAGAGGATGGGGAGCTTGTGCGTTTGTTACCTGCTTGTTACCATGCCTTTCATATTCCTTGCATTGATGCATGGTTCAAGGACCATGCCAATTGCCCCGTTTGCCGGTCACCAATTACTTGTGATTGTGAATCAGCGGTTCCAATTGTTTCACAAAATGGTGACCAACAAAGGGTCTCGGATGTGCATGCCATTATTCCAAGTGATCATCATCATATTAATGTTAATGATGATGTGAGTGCTTCCATCACGAGGTTTCAACAACCTCAGCCTTTGTTGCTTAGACACTCTCTCTCTTTCTCATCATCGCACGTGCAGAAAAAGCCACGAGCTTTGGTCATGGGGTTGAAGAGGTCATTGTCTTTGGATCAGTCATCTTCATATATTGCCATGACCATACTAAGAGATCAGGAAATGGCTTCCACCAATTCTTCAACAAGACACGTTGTGATGAGTCAGTATAACTTTAAATCAAGATCACTGAGGCATCTTGATCACATGTCTTCGGTGTTGATGAGATCCTTCTCGCAATTTCGGAAAAGTGGAAGTGGGAGATCCAATGGGATTCTTCCAAATTGA 864 0.4363 MDDKEAKHGSFVTPLVISAAGIICSTLAIAAYHFILLRYFLRPHRVQRRNNRNRIKKSGGVQEEILNKIPILSYSTLKNEVFPLDHNECSICLGELEDGELVRLLPACYHAFHIPCIDAWFKDHANCPVCRSPITCDCESAVPIVSQNGDQQRVSDVHAIIPSDHHHINVNDDVSASITRFQQPQPLLLRHSLSFSSSHVQKKPRALVMGLKRSLSLDQSSSYIAMTILRDQEMASTNSSTRHVVMSQYNFKSRSLRHLDHMSSVLMRSFSQFRKSGSGRSNGILPN 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi939g00003 287 CDD RING-H2_EL5-like 88 131 - -
Gabi939g00003 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 136 IPR013083 -
Gabi939g00003 287 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Gabi939g00003 287 Pfam Ring finger domain 87 131 IPR001841 -
Gabi939g00003 287 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 136 IPR044675 -
Gabi939g00003 287 SUPERFAMILY RING/U-box 80 137 - -
Gabi939g00003 287 SMART ring_2 89 130 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi939g00003 Gabi-Chr939 32386 33249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi939g00003 17 135 C3H Transcription Factor Family AT5G17600 36.090 1.72e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi939g00003 - - aprc:113863869 358.221