Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi933g00006 ATGTCGAGTGAAGAATATGATTCAGATTCCTCCGATTCCCTGTTGATACGCCTAGTCGAGTGCAGAATCTGTCGTCGTCGTCGTCGTCGTCGTAGGCGCAATCAAGATCGCGATTCCAGCTTTGAGGGATCTAACGTCGAGGTTATTGAGCAGCTCGGCCAGGGCGGCTTCAGCAGAGTTTTCCGGTGCCGCGATCTCAGGACCGACCAGATTGTGGCCATCAAACAGATCGACATGCTTGGCGTAAATGAAGGTGTTCCAAGTTCCGTCCCTAGAGAAGTCTCACTTCTTAAAGAACTGAACCATGTTAACGTTGTCAGGTTGTTGAATGTAATCATCCCCGAAAACAAATACGCGAATCTCGTTTTCGAGCATCTTGATTGTGATCTTCATGATTACATAAGAGATCAACGTTACCCTAAGGATTCGATGACTATAAAGAGTTTTATGTATCAAATACTCTCTGCTGTGGCATACTGTCATTCTCATAAGATTCTCCACAGAGATTTGAAACCAAAGAATCTGCTGATTGATCATTCTAAAAAGATAATCAAGCTCGCTGATTTCGGTTTGGCTAGAGAATTTGGAGACCCTGACATGTTATATACTGCGAAAGTAGGAACTTACTGCTATAGGGCACCTGAAATCTTGTTTGAATCCCGTCAATATTCAACTCCAATTGATTTGTGGTCTGTGGGCTGTATATTTGGTGAGATGGTAATTGGAAAACCTGTACTCCATGTTACCAATTGCCAGGATGAAATAGAGGCGATTTTCAGGTATGTCTCCGCATGTGAAGCAGCTTGGAGAATATTTGGATTTGACATTCATTCGAGATATCCCCCTGTTCAGAGATTGACATTTCACTTGCCTAATGAAAAGAACATTATTTTCAGTGATAATGATTCGTTGTATGATGTAAAGACAAGGGCGGAGTCTAGACTGTCAATTTTTGAGTCTTGGATGGATGCAAATAAAAAATATCCAGAAGGTAGGCATCTAACTTATGGAGAGTACCCGACTGAATTTGTTTTCAAAGAAAAAACGCATGAATGGAATCCGAGAAAAAAAGGATTTTCCATTGGAAGGATAAATCGTTTTTCTGCCAATAATGGAGAAGATTCATATCTTCGTACCTTGCTTAATTTTCAAAGAGGTTGCACCAGTTATGAAGATCTTAGAACGATCAATGGCGTGGTTTTTCCTACATTTAAGGATGCGTGCTATTCTTTAGGACTTCTGGATGATGACAATGAGTACATTGATGCAATTAAGGAGGCAAGTTCCTGGGGATCTGCTGCTTATCTTAGATGTCTGTTTGCTCTGTTGTTATTTGCCAACTCAATGAACAGACCTGAAAAAGTTTGGGAAGAGTGTTGGAAATTTTTATCCGACGACGTTGTTTATCGGCATAGGAAAAGAATAGGACGTCAAGATGCAATTCTTACAGAAGAGTCTATAAAAAACATAACTCTTGAAGAAATTGATAAGGTACTGCAGAGCAATGGGAAATGCCTCTCTGATTATCCGTCAATGCCACGCATCAATAGTGAAACTTTGCTTGATATGCAAAATCGATTAGTGTTGGATGAATTAATGTATGACATATTTGCTTTGGAAGAGGAGCATAAAAGACTAATTAATTCCCTCACTGATGAGCAGAAAGTTGTTTATGATAAAATTGTTTCAGCAGTTACGACAGGTAATGGAGGGTTATTTTTCCTATACGGGTTCGGTGGTACAAGAAAAACATTTATTTGGAAAACTCTTTCAGCATCTATTAGATCAAAAGCTGGAATCGTACTTAATGTTGCTTCTAGCGGAATTGCTTCCCTTCTGCTTCCTGGAGGACGAACAGCGCATTCTAGATTTCGTATTCCTATTCAAATCAATGAAGATTCAACGTGTAATATAAGGCCGAAATCTACTATAGCTGAGTTGCTGTCAAAAACAAAGTTAATCATTTGGGGTGAAGCTCCAATAGTACATAGATTTTGCTTTGAGGCTCTGGATAGGACACTGAGAGATGTTCTTAGAATTTCTGATACAAGCTGTGTTGATATGCCATTTGGTGGAAAAGTTGTTGTTCTAGGAGGTGACTTTCGGCAAATATTACCTGTCATTTCTCATGGCAGCAGACAAGATATAGTTCATGCAACCATCAATTCTTCTCATCTATGGTCCCATTGTCATTTATTAACTTTGACCAAGAACATGCGTCTTAATTCTGGAAGTAGCGCTCACAATTTAGAGGAAATAAAAGAATTTTCTGAGTGGCTACTTAAAGTTGGGGATGGTAATCTTGGAGATGATGTTGATGGAGAATCTATTATAACAATTCCAGATGAATTGTTGATTAGAGAATCAGAAGATCCGCTGTCAGATATGGTTAATTTTGTTTATCCGAATCTCTTGGATAATATTTTGGATCAGACCTTCTTTAAAGAACGTGATATTCTAACTCCTAAATTGTCCGATGTTGCTATGCTAAACGAGCACCTAATGTCTATGATTCCTGGTGAAGAAAGGACTTTTTTGAGTTCGGATAAAATTCTTAAGCAAGGTGGGACTTCCTCTGTTGAGGATGATGAAATCACCCCTGAGATCTTAAATACATTATCATGCTCAGGGATTCCTGATAATAAATTAATCTTGAAAGTTAAAGTTCCAGTAATGCTATTAAGAAATATTGATCAGTCGAGAGGTTTATGCAATGGCACAAGATTGCTTATTACAAAATTAGGGAATCATGTTGTTGAGGCAATTCAACATGATGCTGATATCTGTGCTTCATTGCATTTTAGTTATGACTAG 2814 0.3866 MSSEEYDSDSSDSLLIRLVECRICRRRRRRRRRNQDRDSSFEGSNVEVIEQLGQGGFSRVFRCRDLRTDQIVAIKQIDMLGVNEGVPSSVPREVSLLKELNHVNVVRLLNVIIPENKYANLVFEHLDCDLHDYIRDQRYPKDSMTIKSFMYQILSAVAYCHSHKILHRDLKPKNLLIDHSKKIIKLADFGLAREFGDPDMLYTAKVGTYCYRAPEILFESRQYSTPIDLWSVGCIFGEMVIGKPVLHVTNCQDEIEAIFRYVSACEAAWRIFGFDIHSRYPPVQRLTFHLPNEKNIIFSDNDSLYDVKTRAESRLSIFESWMDANKKYPEGRHLTYGEYPTEFVFKEKTHEWNPRKKGFSIGRINRFSANNGEDSYLRTLLNFQRGCTSYEDLRTINGVVFPTFKDACYSLGLLDDDNEYIDAIKEASSWGSAAYLRCLFALLLFANSMNRPEKVWEECWKFLSDDVVYRHRKRIGRQDAILTEESIKNITLEEIDKVLQSNGKCLSDYPSMPRINSETLLDMQNRLVLDELMYDIFALEEEHKRLINSLTDEQKVVYDKIVSAVTTGNGGLFFLYGFGGTRKTFIWKTLSASIRSKAGIVLNVASSGIASLLLPGGRTAHSRFRIPIQINEDSTCNIRPKSTIAELLSKTKLIIWGEAPIVHRFCFEALDRTLRDVLRISDTSCVDMPFGGKVVVLGGDFRQILPVISHGSRQDIVHATINSSHLWSHCHLLTLTKNMRLNSGSSAHNLEEIKEFSEWLLKVGDGNLGDDVDGESIITIPDELLIRESEDPLSDMVNFVYPNLLDNILDQTFFKERDILTPKLSDVAMLNEHLMSMIPGEERTFLSSDKILKQGGTSSVEDDEITPEILNTLSCSGIPDNKLILKVKVPVMLLRNIDQSRGLCNGTRLLITKLGNHVVEAIQHDADICASLHFSYD 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi933g00006 937 Gene3D - 546 734 IPR027417 -
Gabi933g00006 937 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Gabi933g00006 937 Gene3D Phosphorylase Kinase; domain 1 47 125 - -
Gabi933g00006 937 FunFam Mitogen-activated protein kinase 126 274 - -
Gabi933g00006 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 740 IPR027417 -
Gabi933g00006 937 Pfam PIF1-like helicase 550 914 IPR010285 GO:0000723|GO:0003678|GO:0006281
Gabi933g00006 937 Gene3D Transferase(Phosphotransferase) domain 1 126 265 - -
Gabi933g00006 937 PANTHER UNCHARACTERIZED 253 921 - -
Gabi933g00006 937 SMART serkin_6 46 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00006 937 SUPERFAMILY Protein kinase-like (PK-like) 47 269 IPR011009 -
Gabi933g00006 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 686 925 IPR027417 -
Gabi933g00006 937 Pfam Protein kinase domain 47 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00006 937 ProSiteProfiles Protein kinase domain profile. 46 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00006 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi933g00006 Gabi-Chr933 62054 78879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi933g00006 47 270 Core Cell Cycle Gene Families AT3G48750 48.673 2.73e-64 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Gabi933g00006 PIF1 1.4e-144 CL0023