Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi933g00004 ATGACTTGTTTTCATTTTGTATTCGGTAAGAAAGTGTCTTCTACAACAAGAAGAGATCCAGACATTGATGAAGAACTTTCAGGCATGCAAAATGTAAGAGTCTATACCTACAAAGAACTAAGTATTGCCTCGGACAATTTCAGTCCAGCTAATAAAATCGGGGAAGGTGGTTTTGGTTCTGTCTATAAGGGATTGTTAAAAAATGGAAAATTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGTCAAGGGGTGAATGAATTCATGACAGAGATTAATATGATATCAGAAATAGAGCATGAAAATTTGGTTAAGCTATACGGTTGTTGTGTAGAAGGAAATCACCGAATATTAGTCTACAATTACCTTGAAAACAATAGCCTTGCACAAACTCTTCTAGGTGGAGGTCACAGTAATATCCACTTCAATTGGCGAACACGATCTAGGGTGTGCATTGGGGTTGCACGTGGGCTTGCTTTTCTTCATGAGGAAGTAAGTCCACATATTATTCACAGGGATATAAAAGCAAGCAATATTCTTCTTGACAAAGACCTTACACCAAAGATTTCAGATTTTGGTCTTGCAAAGCTTATTCCATCATACATGACTCACGTCAGCACGCGTGTAGCAGGAACAATAGGTTATTTGGCACCAGAGTATGCAATAAGGGGGCAACTGACACGTAAAGCAGATATTTACAGTTTTGGTGTCCTACTTGTGGAGATAGTCTGTGGGAGAGGTAACACAAATACACGATTACCACTAGGAGATCAATATATTCTAGAGAAGACATGGGAACTTTATGAACGAAAGGAACTGATAGGGTTGGTAGACGTATCACTAAACGGGGAATTTGATGCAGAGGAGGCTTGTAAATTTCTGAAAATTGGCCTTCTTTGCACCCAGGAGACTCCAAAGCTAAGGCCGTCCATGTCTTCTGTGGTCAAGATGCTCACTGGAGAAATGGAAGTTGATGAAATTAAGATAACAAGACCAGGCTTGATTTCAGATATTATGGACCTTAAAATCAGAGAACACAAAAGTAATCTTGATATGAAGACTTCATCTTCATACAATGCATCCTCTGACTCAGACAGCCAGGGGACAATTGTGTCATTAGCTGCTTCAAGTGCTGCAACAACAACCTTTACTATAAAATACGATGAAAGCATGTAA 1176 0.3903 MTCFHFVFGKKVSSTTRRDPDIDEELSGMQNVRVYTYKELSIASDNFSPANKIGEGGFGSVYKGLLKNGKFAAIKVLSAESSQGVNEFMTEINMISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLLGGGHSNIHFNWRTRSRVCIGVARGLAFLHEEVSPHIIHRDIKASNILLDKDLTPKISDFGLAKLIPSYMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVCGRGNTNTRLPLGDQYILEKTWELYERKELIGLVDVSLNGEFDAEEACKFLKIGLLCTQETPKLRPSMSSVVKMLTGEMEVDEIKITRPGLISDIMDLKIREHKSNLDMKTSSSYNASSDSDSQGTIVSLAASSAATTTFTIKYDESM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi933g00004 391 ProSiteProfiles Protein kinase domain profile. 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00004 391 FunFam cold-responsive protein kinase 1 17 122 - -
Gabi933g00004 391 SMART serkin_6 47 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00004 391 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Gabi933g00004 391 FunFam cold-responsive protein kinase 1 123 334 - -
Gabi933g00004 391 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi933g00004 391 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 360 - -
Gabi933g00004 391 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Gabi933g00004 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Gabi933g00004 391 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Gabi933g00004 391 CDD STKc_IRAK 53 320 - -
Gabi933g00004 391 SUPERFAMILY Protein kinase-like (PK-like) 25 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi933g00004 Gabi-Chr933 55075 63257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi933g00004 7 361 Receptor kinase-like Gene Family AT1G07650 51.253 6.31e-112 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi933g00004 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi933g00004 - - gmx:100797706 623.624