Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi930g00007 ATGAAACAGCTTGAGATGCTGGAAAAGATGGATGATGGAGAAATCACAAATGTTTTCCCTCAGAACCCAACTGGTGCATCCAATAACCCTCCACTTTTGAAGAGGAAGAGAAACCTCCCAGGAAATCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTCTAATGGCTACAAACAGATTCTTGTGTGAAACTTGTGGGAAGGGTTTCCAAAGGGATCAAAATCTTCAACTCCATCGACGTGGACATAACCTTCCTTGGAAACTCAAGCAGAGGACAAGCAAAGAAGCAAGGAAGCGAGTTTATGTGTGTCCAGAGAAAACTTGTGTCCATCACGATCCTTCAAGGGCTCTTGGAGACTTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAGTGTGAGAAGTGTTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACTTGTGGCACCAGAGAATACAAATGTGATTGTGGAACTATCTTTTCACGGAGAGATAGCTTCATAACTCACAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAACATCAGACATAAACAACTCGTTAGTTGGTAACATTGGTTACAACGTAATGGGAACATCCATATGCCATAACATGCCAACCCCTTTTTCTTCAATTTTCAAACCAATTTCAAACACTGAAGAAACAAGTAATCAAACATCTAGGGGTTTATCCCTTTGGATGGGTCAAGCATCTCAGGCTCATCAAACAATAGCTACTGGCAATTTACGTGAGATTCATCATCAACTTGGGTCTAATACAAGCTCAGGATCAATATATGGTGGGAACCAACTTGTTCAATGCTCAAATCCTCCACCCTCTAATTATCAGCTAAATTGGGTGTTTGGAACAAAGCTTTCCTCTAATTGCAGCCAAGAGATAACTAGCACTACTACTTCACTTCCACTAGGTAGTATTGTTAAGGATGCTGCTACAAGCCAGCCATTAAGTGTTCCTTCCTTATATAGCTCCCAACACCAATCCCATCAAACATGTTCAGCAAACATGTCTGCCACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGAGCAACCTCAACCGACCCATCATTCCTTGGGAGCTTAGGGTTTAAATGCAGTAACAGTCAAGGTCAAGATGGGAACAATCTTAGTGGCATGTACGGTTCAAGTTCAGTACTCACAAGTCTTGGGAGCGAGGCAGAGAACTCTGCATGTGACTGGTCACAAATGCACCCTGCCAAACGTAGACAAGTACAAAATGAAGAGAGTGGAGGGGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAAACCATTTGTCACCCTTCATCAATCAACGGATGGATTTTATTTGA 1410 0.4284 MKQLEMLEKMDDGEITNVFPQNPTGASNNPPLLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEARKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNATSDINNSLVGNIGYNVMGTSICHNMPTPFSSIFKPISNTEETSNQTSRGLSLWMGQASQAHQTIATGNLREIHHQLGSNTSSGSIYGGNQLVQCSNPPPSNYQLNWVFGTKLSSNCSQEITSTTTSLPLGSIVKDAATSQPLSVPSLYSSQHQSHQTCSANMSATALLQKAAQIGATSTDPSFLGSLGFKCSNSQGQDGNNLSGMYGSSSVLTSLGSEAENSACDWSQMHPAKRRQVQNEESGGGQTRDFLGVGVQNHLSPFINQRMDFI 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi930g00007 469 MobiDBLite consensus disorder prediction 17 31 - -
Gabi930g00007 469 Gene3D Classic Zinc Finger 42 115 - -
Gabi930g00007 469 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Gabi930g00007 469 FunFam protein indeterminate-domain 12-like 42 110 - -
Gabi930g00007 469 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 456 IPR031140 -
Gabi930g00007 469 MobiDBLite consensus disorder prediction 429 449 - -
Gabi930g00007 469 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Gabi930g00007 469 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Gabi930g00007 469 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Gabi930g00007 469 MobiDBLite consensus disorder prediction 15 42 - -
Gabi930g00007 469 Gene3D Classic Zinc Finger 132 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi930g00007 Gabi-Chr930 98650 101448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi930g00007 29 455 IDZ Gene Family AT1G03840 52.567 1.24e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi930g00007 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi930g00007 K25870 - gmx:100790620 691.804