Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi930g00004 ATGCTTCTCTTCCTTCTCTTCTTCCTCTTCTTTCTCTCTCCACCTTTACTTACTCTCTCTCTAAACCAAGACGGCCTATTCCTCCTCCGCGCCAGGCAGCAGCTCTCCGACCCCAACAACTATCTCACCACCTGGAACAGCGCCGACGCCACGCCGTGCCGGTGGAGCGGCGTCACCTGCAACAACCTCACCGGCGCCGTCACCGCCGTCAACCTCTCATTCGCCGGCCTCTCCGGCCCCTTCCCCAGCTCCCTCTGCCGCCTCCAATCTCTCACCTCTCTCTCCCTCTCCAACAACTACATCAACTCCACCCTCCCCGCCGTCGCTATCGCCGGCTTCCGCAGCCTCCGCCACCTCGACCTCTCCATGAACAACCTCGTCGGACCCATCCCCGACACCCTCTCCCAAATCACCACCCTACGCAGCCTCGACCTCTCCTACAACAACTTCTCCGGCGACATTCCGGCGAGCCTCGGCCAGCTCCCGCAACTCGAATCTCTTCACATCGTCTATAACCTCCTCGAAGGAACTATACCCAGTTCTCTTGGGAACATCTCAACGTTAAAGGAGCTTCAACTCGCTTACAACCCGTTCACCCCGGGTCCAATACCTAGTCAACTCGGTAACCTCACCAACCTCGAGAACCTGTGGCTCAGAGAATGCAATCTCGTGGGTCCCATTCCAACCTCACTCGGTAACCTCGCTCGTCTCACCGTGCTTGATCTCTCTGTGAACAACCTCACTGGAACAATACCCGAATCGTTTTCTGGGTTGAAGAGCGTGATTCAGATTGAGCTTTATAGTAACTCGCTCTCTGGCGAGTTACCCGCTGGTTTTTCGAACCTGACCCGGTTGGAAATGTTTGACGCGTCGATGAACGAGTTGACTGGGACGATTCCTGCTGAGTTGTGCGAGTTGCAGCTTGCGTCGCTCAACTTGTACCTTAACAAGCTTGAAGGGTCGTTGCCTGAAAGCATAGCTCGTTCGGAGAAACTCTCTGAACTCAAATTGTTCAACAACAACCTCGTTGGAACGTTGCCGAGTGATTTGGGGAGTAACTCGCCGCTGGAGATTATTGATATTTCGTATACTCAGTTTTCCGGCGAGATTCCGGCGAACCTGTGCCGTCAAGGGAAGCTTGAGGTACTCATTATGATTAATGGTTCATTTTCCGGGGAAATTCCAGAGAGTCTTGGGAATTGCAAGAGCTTAAGGAGGATTCGGCTTAAGAACAATAAGCTCTCTGGTGTGGTTCCTTATGCTTTATGGGGTTTGCCCCATTTGTTTTATCTTGAGCTTATGGACAATTCTCTATCTGGGAACATTTCTAATGCTATTTATGGTGCATATAATATGTCAAGTTTGTTACTTTCGAAGAACAAGTTTTCTGGGTCGATTCCTGATGAAATTGGGTTGTTGCATAATCTTGTGGAGTTTGATGCCAGCCATAATAATCTTTCTGGCCGGATTCCGACGAGTGTGGTCAAATTGAGCCAGTTGTTTAGTCTTGATCTCGGTGACAATCAACTTTCTGGAGAAATTCCAGGTGGAATTGGTCACTTGACTAAGCTCACTGACCTTAATTTGGCAAATAATAGGTTTAATGGCAATATTCCAAGCGAGTTAGGAAGCTTGACTGTGCTTAGTGTTCTTGATCTTTCTTGCAACTACCTTTCCGGTGAAATTCCTCTACAGCTGCAAAATTTGAAGCTTGGTGAGCTGAATTTGTCAAACAATAAGCTTTCTGGAGATATTCCACCCCTTTATGCCAATGACAGGTATAGGATGAGTTTTGTAGGAAATCCTGGCCTCTGTGGCCATCTCTCTGGGCTTTGTCCAAGCTCTGGGGAGAGTAAGAGTAAGTACCGAAGGTATTTGTGGATTTTCCGTTCTATATTTGTGCTTGCTGGAGCTGTGTTCATCGTTGGGATGGCCTGGTTTTACTTGAAATACAGGAACTTAAACAAGTTGAAAAAGGGGTTTAACATTTCAAAGTGGATGTCGTTTCATAAGCTGGGCTTTAGTGAGCTTGAGATTGTGAAATTGATGAGTGAAGACAATGTAATTGGAAGTGGGGCATCTGGGAAGGTCTACAAGGTAGTGCTTAGCAATGGTGAGGTGGTGGCAGTGAAGAAATTGTGGGGAACTGTTGGTTCTAAAAAAGATGAATTTGATGTTGAAGTTGAAACACTAGGAAAGATTAGGCACAAGAATATTGTGAGGTTGTGGTGTTGCTGCAACAGTGGTGATAACAAGCTACTGGTTTATGAGTATATGCCAAATGGGAGCCTTGGTGATATGTTAAAGAATAGCAAGAAAAGCTTGTTGAATTGGCCAACTAGGTGTAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACGATTGTGTCCCACCCATTGTTCATAGGGACATAAAATCTAACAATATATTGCTGGATGGAGAGTTTGTGGCAAAAGTTGCAGATTTCGGAGTTGCCAAAATTGTTGCAGGAGTCAACCAAGGGACAGAATCCATGTCTGTGATTGCAGGATCTTATGGCTACATTGCACCAGAATATGCATATACTCTTCGGGTGAACGAGAAGAGTGATATTTATAGCTTTGGTGTGGTCATTTTGGAGTTGGTAACTGGAAAACCCCCTATTGATGCAGAGTATGGAGAAAATAATCTGGTAAAATGGGTTTCCTCCACGTTGGAAAAAGAAGGACTGGACCATGTGATTGATCCTATTCTAGATTCCAAATATAGTGAACAAATCAGCAAGGTACTGAGTGTGGGGCTTCTTTGCACAAGCTCTCTTCCAATAACACGCCCTTCAATGAGAAAGGTGGTGAAAATGCTTCAGGAGGCAACAACTGCTCCCGAATCCACTAGTGTTAAGAGTGGAAATCTTTCCCCTTATTACAACGATGGGGCCTCTTATAATCAGGGAAACGTAGTTTGA 2955 0.4653 MLLFLLFFLFFLSPPLLTLSLNQDGLFLLRARQQLSDPNNYLTTWNSADATPCRWSGVTCNNLTGAVTAVNLSFAGLSGPFPSSLCRLQSLTSLSLSNNYINSTLPAVAIAGFRSLRHLDLSMNNLVGPIPDTLSQITTLRSLDLSYNNFSGDIPASLGQLPQLESLHIVYNLLEGTIPSSLGNISTLKELQLAYNPFTPGPIPSQLGNLTNLENLWLRECNLVGPIPTSLGNLARLTVLDLSVNNLTGTIPESFSGLKSVIQIELYSNSLSGELPAGFSNLTRLEMFDASMNELTGTIPAELCELQLASLNLYLNKLEGSLPESIARSEKLSELKLFNNNLVGTLPSDLGSNSPLEIIDISYTQFSGEIPANLCRQGKLEVLIMINGSFSGEIPESLGNCKSLRRIRLKNNKLSGVVPYALWGLPHLFYLELMDNSLSGNISNAIYGAYNMSSLLLSKNKFSGSIPDEIGLLHNLVEFDASHNNLSGRIPTSVVKLSQLFSLDLGDNQLSGEIPGGIGHLTKLTDLNLANNRFNGNIPSELGSLTVLSVLDLSCNYLSGEIPLQLQNLKLGELNLSNNKLSGDIPPLYANDRYRMSFVGNPGLCGHLSGLCPSSGESKSKYRRYLWIFRSIFVLAGAVFIVGMAWFYLKYRNLNKLKKGFNISKWMSFHKLGFSELEIVKLMSEDNVIGSGASGKVYKVVLSNGEVVAVKKLWGTVGSKKDEFDVEVETLGKIRHKNIVRLWCCCNSGDNKLLVYEYMPNGSLGDMLKNSKKSLLNWPTRCKIAIDAAEGLSYLHHDCVPPIVHRDIKSNNILLDGEFVAKVADFGVAKIVAGVNQGTESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPIDAEYGENNLVKWVSSTLEKEGLDHVIDPILDSKYSEQISKVLSVGLLCTSSLPITRPSMRKVVKMLQEATTAPESTSVKSGNLSPYYNDGASYNQGNVV 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi930g00004 984 Gene3D Transferase(Phosphotransferase) domain 1 759 970 - -
Gabi930g00004 984 Pfam Protein kinase domain 685 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi930g00004 984 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Gabi930g00004 984 FunFam Receptor-like protein kinase HSL1 307 614 - -
Gabi930g00004 984 ProSiteProfiles Leucine-rich repeat profile. 570 592 IPR001611 GO:0005515
Gabi930g00004 984 Pfam Leucine rich repeat 69 126 IPR001611 GO:0005515
Gabi930g00004 984 Pfam Leucine rich repeat 139 197 IPR001611 GO:0005515
Gabi930g00004 984 Pfam Leucine rich repeat 236 295 IPR001611 GO:0005515
Gabi930g00004 984 Pfam Leucine rich repeat 395 438 IPR001611 GO:0005515
Gabi930g00004 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Gabi930g00004 984 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Gabi930g00004 984 Gene3D Ribonuclease Inhibitor 21 180 IPR032675 -
Gabi930g00004 984 Gene3D Phosphorylase Kinase; domain 1 665 758 - -
Gabi930g00004 984 Gene3D Ribonuclease Inhibitor 266 615 IPR032675 -
Gabi930g00004 984 SUPERFAMILY RNI-like 93 569 - -
Gabi930g00004 984 SUPERFAMILY Protein kinase-like (PK-like) 683 952 IPR011009 -
Gabi930g00004 984 SMART serkin_6 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi930g00004 984 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 264 952 - -
Gabi930g00004 984 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 185 - -
Gabi930g00004 984 SMART LRR_typ_2 401 424 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 113 136 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 497 520 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 137 161 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 521 545 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 234 257 IPR003591 -
Gabi930g00004 984 SMART LRR_typ_2 88 112 IPR003591 -
Gabi930g00004 984 ProSiteProfiles Protein kinase domain profile. 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi930g00004 984 FunFam Receptor-like protein kinase HSL1 667 758 - -
Gabi930g00004 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 759 967 - -
Gabi930g00004 984 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Gabi930g00004 984 Gene3D Ribonuclease Inhibitor 181 265 IPR032675 -
Gabi930g00004 984 SUPERFAMILY L domain-like 306 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi930g00004 Gabi-Chr930 64705 68087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi930g00004 18 984 Receptor kinase-like Gene Family AT1G28440 60.364 0.0 1159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi930g00004 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi930g00004 - - ccaj:109805711 1327