Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi929g00014 ATGGAGGACCAGAACCTTACACTCATTCAGTCTCTGAATTCATCACCCATTACAAACGAGGAAGTGATGCACACCGTTTCCGACAACAACAATAGCAACAACGCCGTACCAGATGCTGTCGGACTTGATTCTGCCTCGGACACGGTGGCAAAGTCCGAGGCTGTTGGTTCGGGACAGCCTGTGAAGAGGGGAAGGGGGAGGCCTCGGAAGTACGATGGTGATGGGAAAATCTTGTCTCTGAAGTCGGAGCCACCAGCCATTTCCACTTACCCTTTTGGAAGTTCTGTCAAGAGAAGTCGAGGACGGCCTCCTGGTTCCGGAAAACTGCAGATTCTGGCTTCCATTGGTGGGTTTGTTGCAGAAACAGCTGGGGGAAGCTTCACACCTCATGTGCTAGTTGTGGACCCTGGAGATGATGTAGTAAGCATGATATTATCATTTTTTCAGAAAGGGCCTCTTGCAGTTTGCATACTTTCTGCCACCGGTGCTGTATCAAGTGTCAGTATTCGCCAAGCAGGTGTTGCTGGTGGTGTTTTGAGCTATGAGGGCCTCTTTGAGATTTTAACTTTATCGGGATCATGTACCTACACTAGTGGCACTGGTGGTACACATCTTAAAAATGGCATGTTGAGTGTTTCATTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGATAGCTCATTGATAGCTGCTGGCCCTATTCAACTTGTTATGGCCACTTTCAAGCAAAACATAAGTAAGCAAATCAAGAGAAGGTGCTTATCTGGATCTTCTACTGCTCCCAATATGCCGGGTAATCCAGATTCAGTGAGGGTCGACCTGAAAGTTCCTAAGTTGATTGAAGGTGAACGGAGTTTCCCTTCACCAACATCAGGACTTAGGCCAACAGCAACAACTAATGTAGAACCAGATCATGTCATTCCAGCAACAACTAATGAATTAGCAGATAATGTTATTCCACCAACAACTAATGAAGTGCCTGATAATGTCATTGCTGCAACAACTAATGAAGTGTCAGATAATATCATTGCTGCAGATAACGATATGCACTCTGCCTCTGTTAATTGTGGTGGTGACATGAACTGCCAGACCCTGAAGCCCATCAAAGACCAAAGAATGTCTGAATATGTCGATGCCAGTGTCCCTCAGATATAA 1161 0.4599 MEDQNLTLIQSLNSSPITNEEVMHTVSDNNNSNNAVPDAVGLDSASDTVAKSEAVGSGQPVKRGRGRPRKYDGDGKILSLKSEPPAISTYPFGSSVKRSRGRPPGSGKLQILASIGGFVAETAGGSFTPHVLVVDPGDDVVSMILSFFQKGPLAVCILSATGAVSSVSIRQAGVAGGVLSYEGLFEILTLSGSCTYTSGTGGTHLKNGMLSVSLAKPDGRVFGGGIDSSLIAAGPIQLVMATFKQNISKQIKRRCLSGSSTAPNMPGNPDSVRVDLKVPKLIEGERSFPSPTSGLRPTATTNVEPDHVIPATTNELADNVIPPTTNEVPDNVIAATTNEVSDNIIAADNDMHSASVNCGGDMNCQTLKPIKDQRMSEYVDASVPQI 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi929g00014 386 SMART AT_hook_2 62 74 IPR017956 GO:0003677
Gabi929g00014 386 SMART AT_hook_2 97 109 IPR017956 GO:0003677
Gabi929g00014 386 MobiDBLite consensus disorder prediction 44 84 - -
Gabi929g00014 386 SUPERFAMILY AF0104/ALDC/Ptd012-like 125 247 - -
Gabi929g00014 386 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 244 IPR005175 -
Gabi929g00014 386 Gene3D - 129 257 - -
Gabi929g00014 386 CDD DUF296 128 243 IPR005175 -
Gabi929g00014 386 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 286 IPR039605 GO:0003680
Gabi929g00014 386 ProSiteProfiles PPC domain profile profile. 124 264 IPR005175 -
Gabi929g00014 386 PRINTS AT-hook-like domain signature 95 106 IPR017956 GO:0003677
Gabi929g00014 386 PRINTS AT-hook-like domain signature 62 72 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi929g00014 Gabi-Chr929 164509 173030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi929g00014 36 243 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 44.976 1.47e-47 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi929g00014 - - aip:107632385 327.405