Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi929g00003 ATGGAAATTCCAATGGAGTTTTGGGGTGTTGAGGTTAAGGTTGGGCAGTCTGTTAAAGTTGACCCAATGGATCCAGTTAGTGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGACAAAGCAAGTGAACCTGTGGTTTTGTACTTGAAAGTTGATGACCAAAAGTTTGTTTTGGGAACTCTTTCTAGGGATGACATTCCTCATATATCTCTGGATTTGGTTCTAGACTCCGAGTCTGAGCTTTCCCACAATTCCAAAAATGCTAGTGTTTATTTTTGTGGATACAGAGTTGTAACTGAGGAAGGCAATAATTCTGACTTTTCTGATAGTGATGATGATCTTATATTGGAGGACGAAGATAGTGGAAAACCTGAAACAAAAGCTGGGGATGCAAAGGTTACTCAAGCTAAGAAACCTGTTGCTGTGGTTGGTGCATTAGCAAAACAAGTCAAAATTGTTGATCCAAAGAAAGATGAAGAGGATGACTCCGATGATGATGACGAAGATGAATTGGGAGATTCTGATGAGATGGATGCTGATAGTGATAGTGATGAGGAGAGTGAGAGTGATGAAGAGACCCCTGCTAAGACCCCTGTTAAGAAGGTGGATCAGGGCAAAAAGAGACCAAGTGAGTCTGCATCAAAAACTCCTGTTCCTACCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAGAAAAATGTACATACAGCAACCCCTCACCCTATGAAGAAGGGTGGAAAGACTCCCAACAGTGCAAAGAACCAGACTCCCAATTCTGGTGGACAATTATCTTGCAAAAGTTGTAACAAGTCTTTCACCTCCGAAACTGGTCTTCAATCACATAACAAGGCTAAGCACGGTGATAAGTGA 891 0.4153 MEIPMEFWGVEVKVGQSVKVDPMDPVSGYIHISQVALGEAKKDKASEPVVLYLKVDDQKFVLGTLSRDDIPHISLDLVLDSESELSHNSKNASVYFCGYRVVTEEGNNSDFSDSDDDLILEDEDSGKPETKAGDAKVTQAKKPVAVVGALAKQVKIVDPKKDEEDDSDDDDEDELGDSDEMDADSDSDEESESDEETPAKTPVKKVDQGKKRPSESASKTPVPTKKAKNATPEKTDGKKNVHTATPHPMKKGGKTPNSAKNQTPNSGGQLSCKSCNKSFTSETGLQSHNKAKHGDK 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi929g00003 296 Pfam Nucleoplasmin-like domain 7 100 IPR041232 -
Gabi929g00003 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Gabi929g00003 296 FunFam Histone deacetylase HDT1 5 105 - -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 109 123 - -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 255 287 - -
Gabi929g00003 296 Gene3D Nucleoplasmin core domain 2 107 - -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 229 243 - -
Gabi929g00003 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 163 195 - -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 196 214 - -
Gabi929g00003 296 SUPERFAMILY beta-beta-alpha zinc fingers 262 292 IPR036236 -
Gabi929g00003 296 Pfam Zinc-finger of C2H2 type 271 290 - -
Gabi929g00003 296 MobiDBLite consensus disorder prediction 106 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi929g00003 Gabi-Chr929 34500 37435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi929g00003 5 293 C2H2 Transcription Factor Family AT5G03740 38.608 1.18e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi929g00003 NPL 7.4e-13 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi929g00003 - - gmx:547649 349.747