Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi927g00004 ATGTCTCTGACATCCAAGGTCCTGCCTGCTCTCCAGTCTATCAAATCATTGCCTCCTGGGTTCAAGGTTACTGGTAATCCAAACCCTGATCTAATGGAAAACTGTGGAGATGCTAAATTGAGAAGCATTGACTTGATTAAATCAAGTATTCCTGAAAATGATGCTCTAATTGGGGAGGTTTCTGAAGAAGCTCAGGACCATGTGGGTGACATGGGTCTTTTTGATGAGGACTTGGCATATAGCAGAAAAGTTGTATCATTGGAAGACAGGCCATCAATTGCTGATGAGGACTTAGAATCTGTTCCTCTGCCCTTCCCATCAGTTTCGATGTCCTCTAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTTCAAATAAGAAGAAGCTTCAGTCATGGTTTCAACTTCCTAATGGGAATTGGGAGCTGGGGAAGATATTAACGACTTCTGGAACTGAATCAGTCATTTCACTGCCTGATGGAAAGGTTTTGAAAGTGAAAGAAGAAAGTTTGCTACCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAACGAACCGTCAGTTTTATACAATCTGCAATATAGATACAATCAAAATATGATTTATACTAAAGCAGGGCCTGTTTTGGTTGCTATAAATCCCTTTAAGAAAGTTCCTCTGTATGGTAATGATTATATTGAAGCCTACAAGCGTAAAACAATTGAAAGCCCTCATGTATATGCAATTACAGACACAGCCATCCGAGAAATGATACGAGATGAAGTTAATCAATCTATAATAATAAGTGGTGAGAGTGGAGCAGGGAAGACAGAGACAGCAAAGATAGCAATGCAATACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTGTGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATCTCTGGTGCTAATATTCAAACATTTTTGCTGGAAAAGTCCAGAGTAGTCCAATGCAATGAAGGGGAAAGATCGTATCATATATTTTATCAGCTATGTGCTGGTGCATCACCATCTCTCAGAGGGAAGCTAAACTTACAAAATGCAGAAGACTATAAATATCTGAGGCAAAGCAATTGTTATTCAGTTACTGGTGTTAATGACGCAGAAGAATTTTGCGCAGTCATGGAAGCTCTTGATGTTGTCCACATTAGTAAAGAAGACCAGGAGAATGCATTTGCAATGCTTGCTGCAGTGTTATGGTTAGGAAACATATCATTTACTGTGATTGATAATGAAAATCATGTTCAAGCTGTAGAAGATGAGGGTCTGTCCCACGTTGCCAAATTGATTGGCTGTGACATTGAAGATCTCAAGTTGACTCTATCAACCCGCAAAATGAAAGTTGGTAAAGATAATATTGTCCAAAAGTTGACACTATCACAGGCAATTGATGCAAGAGATGCTTTGGCAAAGTCAATATATGCAAGCCTGTTCGATTGGTTGGTTGAACAAATAAATAAATCACTTGCTGTTGGCAAAAGACGTACTGGCAGATCAATCAGTATTCTTGATATCTACGGCTTTGAATCATTTAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACACTTCAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATACAAGATGGCATTGACTGGACTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAGAAGAGGCCACTGGGATTATTATCCCTATTAGATGAAGAGTCCACTTTCCCAAATGGCACGGATTTAACATTTGCTAACAAGCTGAAACAGCATTTGAATTCTAATTTATGTTTCAAAGGAGAAAGGGACCAAGCCTTTACTGTGTGTCATTATGCTGGGGAGGTCTCCTATGATACAACTGGGTTTCTGGAGAAGAACAGGGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCATCCACATGTCATCTTCCTCAAATATTTGCATCTCATATGCTTACTCTGTCTGATAAGCCGGTAGTTGGTCCGTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTAAGTGTTGCAACAAAATTCAAGGGTCAATTGTTCCAACTGATGCAACGATTAGAGAGCACTACTCCACATTTTATTCGCTGCATTAAGCCCAATAATCTCCAATCGCCTGAATCATATGAGCAAGGGCTTGTACTGCAACAGCTAAGATGCTGTGGGGTCCTGGAAGTAGTTCGAATATCGAGATCAGGCTTTCCAACAAGAATGTCTCACCAAAAGTTTGCCAGAAGATATGGTTTTCTTCTGCTTGATAATGTTGCATCTCAGGATCCACTTAGTGTTTCAGTTGCAATTCTTCATCAGTTTAAAATTTTGCATGAGATGTATCAAGTTGGATACACCAAGTTATTTTTCCGAACAGGGCAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTCCAAAGTTGCTTCAGGGGTCACAAAGCTCGTTGTTCTCTCAAGGAGTTTCGGGGAGGAATCACTACTCTGCAGTCATTTATTAGGGGAGACAAAACCAGAAAGGCATATGCAGCTTTACTTCGGAGACATAGAGCTGCTGTTATTATACAGAAGCGGATAAAAGCAGTACTTGCAAGAAATAGAATGAGGACTATTAGTGATGCTGCAATTGTCATACAATCAGTTATTCGTGGTTGGTTGGTCAGAAGATGCTCAGGAGACATTGGATTTTTGAAATCCAGAGACTTGAAGATGAAAGAGTCAGATGAGGTTCTGGTTAAGTCATCTTTCCTGGCTGAATTACAGCGCCGGGTACTTAGGGCTGAAGCTGCCTTGAGAGAGAAAGAAGAGGAAAATGACATCCTTCACCAACGTCTGCAACAATACGAGAGCAGATGGTCTGAGTATGAATTGAAGATGAAATCCATGGAAGAAGTGTGGCAGAAACAAATGAGATCCCTACAATCTAGCCTCTCCATTGCAAAGAAGAGCCTTGCTATTGATGACTCTGAAAGAAATTCAGATGCATCTGTTAATGCAAGTGACGAGCGGGATTACAGCTGGGATGTAGGAAGTAATCACAAGCGCCAAGAAAGCAATGGGACAAGATCAACGAGTGCTGGTTTGAATGTTATAAGTCGGCTGGCTGAAGAATTCGAGCAGAGGAGTCAAGTATTTGGTGATGATGCCAAGTTCTTGGTTGAGGTAAAATCTGGTCAAGTAGAAGCAAGTATGAACCCAGATCAAGAGCTTCGAAGGTTAAAACAGATGTTTGAAGCTTGGAAAAAGGATTATGGGGCAAGACTGCGTGAAACAAAGGTCATTATAAATAAACTTGGAAGTGAAGATGGTGCACTTGAGAAAGTAAAGAAAAAGTGGTGGGGAAGAAGGAACAGTACAAGGATGAATTGA 3534 0.4032 MSLTSKVLPALQSIKSLPPGFKVTGNPNPDLMENCGDAKLRSIDLIKSSIPENDALIGEVSEEAQDHVGDMGLFDEDLAYSRKVVSLEDRPSIADEDLESVPLPFPSVSMSSRERRWSDTTPYASNKKKLQSWFQLPNGNWELGKILTTSGTESVISLPDGKVLKVKEESLLPANPDILDGVDDLMQLSYLNEPSVLYNLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNDYIEAYKRKTIESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIECEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGASPSLRGKLNLQNAEDYKYLRQSNCYSVTGVNDAEEFCAVMEALDVVHISKEDQENAFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLSHVAKLIGCDIEDLKLTLSTRKMKVGKDNIVQKLTLSQAIDARDALAKSIYASLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTKVEFEDNQDCLNLFEKRPLGLLSLLDEESTFPNGTDLTFANKLKQHLNSNLCFKGERDQAFTVCHYAGEVSYDTTGFLEKNRDLLHLDSIQLLSSSTCHLPQIFASHMLTLSDKPVVGPLHKSGGADSQKLSVATKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPESYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLDNVASQDPLSVSVAILHQFKILHEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGHKARCSLKEFRGGITTLQSFIRGDKTRKAYAALLRRHRAAVIIQKRIKAVLARNRMRTISDAAIVIQSVIRGWLVRRCSGDIGFLKSRDLKMKESDEVLVKSSFLAELQRRVLRAEAALREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAIDDSERNSDASVNASDERDYSWDVGSNHKRQESNGTRSTSAGLNVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASMNPDQELRRLKQMFEAWKKDYGARLRETKVIINKLGSEDGALEKVKKKWWGRRNSTRMN 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi927g00004 1177 ProSiteProfiles IQ motif profile. 926 955 IPR000048 GO:0005515
Gabi927g00004 1177 Gene3D Kinesin motor domain 179 785 IPR036961 -
Gabi927g00004 1177 FunFam Myosin heavy chain 362 418 - -
Gabi927g00004 1177 SMART MYSc_2a 174 853 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 Pfam Myosin head (motor domain) 182 840 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 ProSiteProfiles IQ motif profile. 856 883 IPR000048 GO:0005515
Gabi927g00004 1177 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 127 176 IPR004009 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 PANTHER MYOSIN 173 1169 - -
Gabi927g00004 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 901 IPR027417 -
Gabi927g00004 1177 Coils Coil 972 1020 - -
Gabi927g00004 1177 ProSiteProfiles Myosin motor domain profile. 180 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 ProSiteProfiles IQ motif profile. 878 906 IPR000048 GO:0005515
Gabi927g00004 1177 ProSiteProfiles IQ motif profile. 903 929 IPR000048 GO:0005515
Gabi927g00004 1177 MobiDBLite consensus disorder prediction 1045 1079 - -
Gabi927g00004 1177 Gene3D - 550 742 - -
Gabi927g00004 1177 Gene3D - 786 853 - -
Gabi927g00004 1177 Gene3D Myosin VI head, motor domain, U50 subdomain 419 527 - -
Gabi927g00004 1177 Gene3D - 362 418 - -
Gabi927g00004 1177 Pfam IQ calmodulin-binding motif 904 924 IPR000048 GO:0005515
Gabi927g00004 1177 Pfam IQ calmodulin-binding motif 928 944 IPR000048 GO:0005515
Gabi927g00004 1177 Pfam IQ calmodulin-binding motif 858 875 IPR000048 GO:0005515
Gabi927g00004 1177 PRINTS Myosin heavy chain signature 591 619 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 PRINTS Myosin heavy chain signature 264 289 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 PRINTS Myosin heavy chain signature 538 566 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 PRINTS Myosin heavy chain signature 306 333 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 PRINTS Myosin heavy chain signature 210 229 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi927g00004 1177 Gene3D - 856 904 - -
Gabi927g00004 1177 Gene3D - 905 947 - -
Gabi927g00004 1177 SMART iq_5 853 875 IPR000048 GO:0005515
Gabi927g00004 1177 SMART iq_5 925 947 IPR000048 GO:0005515
Gabi927g00004 1177 SMART iq_5 876 898 IPR000048 GO:0005515
Gabi927g00004 1177 SMART iq_5 902 924 IPR000048 GO:0005515
Gabi927g00004 1177 FunFam Unconventional myosin-XIX 550 742 - -
Gabi927g00004 1177 CDD MYSc_Myo8 194 840 IPR036022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi927g00004 Gabi-Chr927 43782 64716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi927g00004 3 1175 Myosins gene family AT1G50360 75.234 0.0 1802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi927g00004 - K10357 gmx:100781736 2125.52