Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi926g00019 | ATGGCCAAGAAGCGAAAGCTTCGATCCTCCGACCCCGAGCCCACCAAGCAGGTCGAGCCACAACCCTCACAGGAACAGGACCAAGAGGTAGTGGAAGCGGACCAACAACCCAACCCTGAACCAACCCCAGTAGAAGAAGACAACCACAATATGGCCGTCGATGAAGACCACGCGCCGCTACAGGAACAGGAACAACCGCAAGATGATGATGCAAACGCCGAAGGAGAACCAGAAGAAGAGCCGGAAGATGAACAAGAAGGAGAACAACCACAACAAGAACACGAAAACCTAGAAGAACAAGAGCAGGAAGACGCAGAAGCTTTGAACCATGCTGCGACATCGGAATCCGTTGGGGTTGAGGCGAACGGCGCTGAGGATGGTGGGAACGAAGAAGAAGACCTCGGATTGGAGGACGAGCCCGTCGAGAAGCTTCTGGAACCTTTCACGAAGGAGCAGCTGCACTCTCTGGTGAATCAAGCCGTTGAGAAGTACCCGGATTTCGTGGAGAATGTTCGTCAGCTGGCCGATGTTGACCCCGCTCACCGGAAAATCTTCATCCACGGCCTCGGTTGGGACACCACAGCCGAAACCCTTACCAGCGTGTTTGGGAAGTACGGCGAGATCGAAGACTGCAAGGCCGTTACCGATAAGGTGTCTGGGAAATCGAAGGGCTATGCCTTCATCTTGTTCAAGCATAGGAGTGGGGCTCGTAAAGCGCTGAAGCAGCCCCAGAAGAAGATTGGGAACAGAACCACCTCATGTCAGTTGGCCTCCGCCGGACCTGTTCCGGCACCGCCACCTACGGTTCCTGCTGTTTCTGAATACACCCAGAGGAAGATCTTTGTGAGCAATGTGAGTGCAGAGATTGATCCCCAAAAGCTGCTTGAGTTCTTCAGGCAATTTGGAGAGGTGGAGGATGGTCCTCTGGGTCTTGACAAACAGACCGGGAGGCCGAAGGGATTTGCACTCTTTGTGTACAAGTCCGTGGAGTCTTCTAAGAAGGCTTTGGAAGAGCCGCACAAGAATTTTGAGGGGCACGTTTTATATTGTCAGAAGGCTGTAGATGGTCCTAAGGGAAACAAAGGGTATCATCAGCAACAGCACCACCAGCCACACCACTCTCATCATCACCATCAGACTCACTACCAGTCAAGGAAGGACAAGAACAAGTATTCCTCTGGTGGTGGGCCGTCACATGGTGGTGGTGGTCACCTAATGGCGCCGTCAGCCCCTGCTGTTGGGGGTTTCAATCCAGGAGTTCCAGCTCAGGGGTTGAATCCGGCGCTTGGACAGGCATTAACTGCTTTGCTTGCAAATCAAGGAGCTGGCTTGGGGCTTGGGAATCTTCTTGGAGGTCTTGGTGGTGCACCAGTGAACCAGGCCAGGCCACCTGCTGCATATGGTAATCAGGCTGCTATGAGCTATGGGAACCAACCAGGGATGCAACCGGGGTACCAAAATCCTCAAATGGGCCAGAGTAGTGGTGTTAGACCTCACCCTGGTGCTGGCCCTCCTTACATGGGTCATTAG | 1530 | 0.5359 | MAKKRKLRSSDPEPTKQVEPQPSQEQDQEVVEADQQPNPEPTPVEEDNHNMAVDEDHAPLQEQEQPQDDDANAEGEPEEEPEDEQEGEQPQQEHENLEEQEQEDAEALNHAATSESVGVEANGAEDGGNEEEDLGLEDEPVEKLLEPFTKEQLHSLVNQAVEKYPDFVENVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPAPPPTVPAVSEYTQRKIFVSNVSAEIDPQKLLEFFRQFGEVEDGPLGLDKQTGRPKGFALFVYKSVESSKKALEEPHKNFEGHVLYCQKAVDGPKGNKGYHQQQHHQPHHSHHHHQTHYQSRKDKNKYSSGGGPSHGGGGHLMAPSAPAVGGFNPGVPAQGLNPALGQALTALLANQGAGLGLGNLLGGLGGAPVNQARPPAAYGNQAAMSYGNQPGMQPGYQNPQMGQSSGVRPHPGAGPPYMGH | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi926g00019 | 509 | Gene3D | - | 174 | 260 | IPR012677 | - | |
| Gabi926g00019 | 509 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 66 | 372 | - | - | |
| Gabi926g00019 | 509 | SUPERFAMILY | RNA-binding domain, RBD | 170 | 258 | IPR035979 | GO:0003676 | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 471 | 494 | - | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 47 | 64 | - | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 67 | 89 | - | - | |
| Gabi926g00019 | 509 | Coils | Coil | 91 | 111 | - | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 365 | 384 | - | - | |
| Gabi926g00019 | 509 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 356 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 354 | 410 | - | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 469 | 509 | - | - | |
| Gabi926g00019 | 509 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 182 | 259 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | SMART | rrm1_1 | 279 | 351 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | SMART | rrm1_1 | 183 | 255 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | SUPERFAMILY | RNA-binding domain, RBD | 262 | 373 | IPR035979 | GO:0003676 | |
| Gabi926g00019 | 509 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 184 | 251 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 348 | IPR000504 | GO:0003723 | |
| Gabi926g00019 | 509 | Gene3D | - | 269 | 404 | IPR012677 | - | |
| Gabi926g00019 | 509 | MobiDBLite | consensus disorder prediction | 1 | 136 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi926g00019 | Gabi-Chr926 | 119769 | 124831 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi926g00019 | 270 | 357 | C2H2 Transcription Factor Family | AT2G19380 | 29.545 | 2.28e-09 | 58.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi926g00019 | K12741 | - | gmx:100783742 | 631.713 |