Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi926g00007 ATGAGTCAGCCTAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGGAAGGAACTCTGAGACGGGGGAATCTGTGGCTCTCAAAATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAAGCGGGAAGTAGCTACAATGAAGTTAATTAAGCATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAGATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGATCTGAAGCCAGAAAATTTGCTATTAGATGCTTATGGGAACCTTAAAGTTTCTGATTTTGGGTTGAGTGCACTCTCCCAACAAGTTAGGGATGATGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTATGATGGTGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTGCCATTCGATGACCCTAATATCATGAACCTGTATAAAAAAGTGAGCACTATCTCAGTTGCTGACTTTACTTGCCCCCCATGGCTTTCCTTCAGTGCCCGGAAATTGATAACTCGAATCTTGGATCCCAACCCAATGACTCGTGTCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAACGGGGAAATCAACCTTGATGATGTAGAAGCTGTCTTCAAGGATTCTGAAGAGCACCATGTAACAGAGAAGAAGGAAGAGCACCCAACAGCCATGAATGCATTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGACATAGAGCAGGGATTTAAAAGGGAAACAAGATTTACATCAAAATCCCCTGCTGATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTAAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTGGCACCTTCTATTCACATGGTTGAGGTACGGAAAGCAAAAGGCGACACATTGGAGTTCCATAAGTTCTACAAAAGCCTTTCAAAATGCCTGGAGGATGTTGTTTGGAAAACTGAAGATGATATGCAAATGCAAGGAAAAAATTGA 1335 0.4172 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFGRNSETGESVALKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNIMNLYKKVSTISVADFTCPPWLSFSARKLITRILDPNPMTRVTIPEILDDEWFKKDYKPPVFEENGEINLDDVEAVFKDSEEHHVTEKKEEHPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSIHMVEVRKAKGDTLEFHKFYKSLSKCLEDVVWKTEDDMQMQGKN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi926g00007 444 CDD STKc_SnRK3 12 270 - -
Gabi926g00007 444 ProSiteProfiles Protein kinase domain profile. 13 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00007 444 Pfam NAF domain 311 370 IPR004041 GO:0007165
Gabi926g00007 444 SUPERFAMILY Protein kinase-like (PK-like) 9 286 IPR011009 -
Gabi926g00007 444 CDD CIPK_C 315 429 - -
Gabi926g00007 444 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Gabi926g00007 444 FunFam Non-specific serine/threonine protein kinase 308 433 - -
Gabi926g00007 444 FunFam Non-specific serine/threonine protein kinase 6 312 - -
Gabi926g00007 444 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Gabi926g00007 444 Gene3D Kinase associated domain 1, KA1 308 433 - -
Gabi926g00007 444 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Gabi926g00007 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 422 - -
Gabi926g00007 444 Gene3D Transferase(Phosphotransferase) domain 1 93 298 - -
Gabi926g00007 444 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Gabi926g00007 444 Pfam Protein kinase domain 13 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00007 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gabi926g00007 444 SMART serkin_6 13 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi926g00007 Gabi-Chr926 51155 60482 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi926g00007 5 414 CBL-interacting serine-threonine protein kinases AT2G26980 80.244 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi926g00007 Pkinase 3.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi926g00007 - - gmx:100794566 838.18