Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi926g00006 ATGAGTCAGCCTAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGGAAGGAACTCTGAGACGGGGGAATCTGTGGCTCTCAAAATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAAGCGGGAAGTAGCTACAATGAAGTTAATTAAGCATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAGATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGATCTGAAGCCAGAAAATTTGCTATTAGATGCTTATGGGAACCTTAAAGTTTCTGATTTTGGGTTGAGTGCACTCTCCCAACAAGTTAGGGATGATGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTATGATGGTGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTGCCATTCGATGACCCTAATATCATGAACCTGTATAAAAAAATCTCAGTTGCTGACTTTACTTGCCCCCCATGGCTTTCCTTCAGTGCCCGGAAATTGATAACTCGAATCTTGGATCCCAACCCAATGACTCGTGTCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAACGGGGAAATCAACCTTGATGATGTAGAAGCTGTCTTCAAGGATTCTGGTATTCAGGAGCACCATGTAACAGAGAAGAAGGAAGAGCACCCAACAGCCATGAATGCATTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGACATAGAGCAGGGATTTAAAAGGGAAACAAGATTTACATCAAAATCCCCTGCTGATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTAAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACAGAGATATTTCAAGTGGCACCTTCTATTCACATGGTTGAGGTACGGAAAGCAAAAGGCGACACATTGGAGTTCCATAAGTTCTACAAAAGCCTTTCAAAATGCCTGGAGGATGTTGTTTGGAAAACTGAAGATGATATGCAAATGCAAGGAAAAAATTGA 1332 0.4167 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFGRNSETGESVALKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNIMNLYKKISVADFTCPPWLSFSARKLITRILDPNPMTRVTIPEILDDEWFKKDYKPPVFEENGEINLDDVEAVFKDSGIQEHHVTEKKEEHPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSIHMVEVRKAKGDTLEFHKFYKSLSKCLEDVVWKTEDDMQMQGKN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi926g00006 443 Gene3D Kinase associated domain 1, KA1 307 432 - -
Gabi926g00006 443 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00006 443 FunFam Non-specific serine/threonine protein kinase 307 432 - -
Gabi926g00006 443 CDD CIPK_C 314 428 - -
Gabi926g00006 443 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Gabi926g00006 443 CDD STKc_SnRK3 12 267 - -
Gabi926g00006 443 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 421 - -
Gabi926g00006 443 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Gabi926g00006 443 Gene3D Transferase(Phosphotransferase) domain 1 93 275 - -
Gabi926g00006 443 Pfam NAF domain 310 369 IPR004041 GO:0007165
Gabi926g00006 443 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Gabi926g00006 443 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00006 443 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00006 443 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Gabi926g00006 443 SUPERFAMILY Protein kinase-like (PK-like) 9 281 IPR011009 -
Gabi926g00006 443 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gabi926g00006 443 FunFam Non-specific serine/threonine protein kinase 6 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi926g00006 Gabi-Chr926 51154 60483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi926g00006 5 413 CBL-interacting serine-threonine protein kinases AT2G26980 80.440 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi926g00006 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi926g00006 - - gmx:100794566 842.032