Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi926g00004 ATGAGTCAGCCTAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGGAAGGAACTCTGAGACGGGGGAATCTGTGGCTCTCAAAATTCTTGACAAAGAGAAGGTTCTCAAGCACAAGATGGCTGAGCAGATCAAGCGGGAAGTAGCTACAATGAAGTTAATTAAGCATCCAAATGTTGTTCGACTATATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGGGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAGATGAAGCACGTAGATATTTCCAGCAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGATCTGAAGCCAGAAAATTTGCTATTAGATGCTTATGGGAACCTTAAAGTTTCTGATTTTGGGTTGAGTGCACTCTCCCAACAAGATGATGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTCCTTAATGATAGAGGCTATGATGGTGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTGCCATTCGATGACCCTAATATCATGAACCTGTATAAAAAAATCTCAGTTGCTGACTTTACTTGCCCCCCATGGCTTTCCTTCAGTGCCCGGAAATTGATAACTCGAATCTTGGATCCCAACCCAATGACTCGTGTCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAACGGGGAAATCAACCTTGATGATGTAGAAGCTGTCTTCAAGGATTCTGAAGAGCACCATGTAACAGAGAAGAAGGAAGAGCACCCAACAGCCATGAATGCATTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGACATAGAGCAGGGATTTAAAAGGGAAACAAGATTTACATCAAAATCCCCTGCTGATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATATTTCAAGTGGCACCTTCTATTCACATGGTTGAGGTACGGAAAGCAAAAGGCGACACATTGGAGTTCCATAAGTTCTACAAAAGCCTTTCAAAATGCCTGGAGGATGTTGTTTGGAAAACTGAAGATGATATGCAAATGCAAGGAAAAAATTGA 1263 0.4149 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFGRNSETGESVALKILDKEKVLKHKMAEQIKREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNIMNLYKKISVADFTCPPWLSFSARKLITRILDPNPMTRVTIPEILDDEWFKKDYKPPVFEENGEINLDDVEAVFKDSEEHHVTEKKEEHPTAMNAFELISMSKGLNLENLFDIEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKIFQVAPSIHMVEVRKAKGDTLEFHKFYKSLSKCLEDVVWKTEDDMQMQGKN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi926g00004 420 CDD STKc_SnRK3 12 265 - -
Gabi926g00004 420 SUPERFAMILY Protein kinase-like (PK-like) 9 282 IPR011009 -
Gabi926g00004 420 ProSiteProfiles Protein kinase domain profile. 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00004 420 CDD CIPK_C 310 405 - -
Gabi926g00004 420 SMART serkin_6 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00004 420 Gene3D Transferase(Phosphotransferase) domain 1 93 293 - -
Gabi926g00004 420 Pfam Protein kinase domain 13 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00004 420 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Gabi926g00004 420 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Gabi926g00004 420 Pfam NAF domain 306 365 IPR004041 GO:0007165
Gabi926g00004 420 Gene3D Kinase associated domain 1, KA1 303 409 - -
Gabi926g00004 420 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Gabi926g00004 420 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 398 - -
Gabi926g00004 420 ProSiteProfiles NAF domain profile. 304 328 IPR018451 GO:0007165
Gabi926g00004 420 FunFam Non-specific serine/threonine protein kinase 6 307 - -
Gabi926g00004 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi926g00004 Gabi-Chr926 51154 60484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi926g00004 5 370 CBL-interacting serine-threonine protein kinases AT2G26980 83.424 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi926g00004 Pkinase 6.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi926g00004 - - gmx:100794566 787.719