Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi926g00003 ATGTTGCTCTTGTGTCCTGAAAAAACAAACACTTTCATAATGGGAAACTCATGCAGGAAACCAGTTTCTCATGTGTCTTCAACAAGTATTTTTGGAAGTACAAAGCCTCAAAGTAAGACAAAGAAGTATTCTAAAATTCCAGAACGAAAAGATGCTTTGCAAACTTCAGGATCAAGTGTTGACAAATCCATCTCCAATAAGCTCAAGTCCTTCACCTTCACTGATCTAAAGGAGGCCACTAAGAACTTCAAGCAAGAAAATTTAATTGGGGAGGGAGGATTTGGGTTTGTCTACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAAACCAGGGACTGGGATTGTAGTGGCCATTAAGAACCTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGATAAACACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTCAGAAAGGGTGTTCAACCCATTACTTGGATTACACGGATCAATATTGCAATTGCTGTTGCAAGAGGATTAACATTCTTACACTCCCTTGATGCAAATGTTATCTACCGTGATTTAAAGGCTTCCAACGTCCTGCTTGATTCGGATTTCAATGCTAAACTCTCTGATTTTGGCTTGGCAAGAGATGGTCCAACTGGAGAAAACACTCACGTTTCAACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAGTACGTAGCTACAGGTCATTTGACCCCTAGGAGTGATGTATACAGCTTTGGTGTGGTCTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGAGAGACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGTAGAAGAATTTTGAGAATCATGGATACCAGGTTGGGTGGTCAATATTCCAAGAAAGGAGCCCAAGCTGCAGCTTCACTTGCACTGCAATGCCTGAATACTGATCCCAAACATAGACCACCTATGGTGAATGTTCTAGCTGTATTGGAAGCTCTGCATTCCTCAAATTCAATCCCAAAGACCCCAAAATCTAGAACTGAGAATAATGCAAACAAGCATTCTAGTCATTCCCATAAGTCAGCTGGAAATACTAACAAACTATGA 1209 0.4094 MLLLCPEKTNTFIMGNSCRKPVSHVSSTSIFGSTKPQSKTKKYSKIPERKDALQTSGSSVDKSISNKLKSFTFTDLKEATKNFKQENLIGEGGFGFVYKGWIDENTYAPTKPGTGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSDDKHRLLVYEFMQKGSLENHLFRKGVQPITWITRINIAIAVARGLTFLHSLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGENTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDSRRILRIMDTRLGGQYSKKGAQAAASLALQCLNTDPKHRPPMVNVLAVLEALHSSNSIPKTPKSRTENNANKHSSHSHKSAGNTNKL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi926g00003 402 ProSiteProfiles Protein kinase domain profile. 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00003 402 CDD STKc_IRAK 89 367 - -
Gabi926g00003 402 Gene3D Transferase(Phosphotransferase) domain 1 169 393 - -
Gabi926g00003 402 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 169 378 - -
Gabi926g00003 402 SUPERFAMILY Protein kinase-like (PK-like) 58 370 IPR011009 -
Gabi926g00003 402 MobiDBLite consensus disorder prediction 371 402 - -
Gabi926g00003 402 Gene3D Phosphorylase Kinase; domain 1 58 168 - -
Gabi926g00003 402 PANTHER OS01G0588500 PROTEIN-RELATED 45 368 - -
Gabi926g00003 402 FunFam Serine/threonine-protein kinase BIK1 50 168 - -
Gabi926g00003 402 ProSitePatterns Protein kinases ATP-binding region signature. 89 121 IPR017441 GO:0005524
Gabi926g00003 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Gabi926g00003 402 MobiDBLite consensus disorder prediction 29 48 - -
Gabi926g00003 402 SMART serkin_6 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00003 402 Pfam Protein kinase domain 83 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi926g00003 Gabi-Chr926 23962 28109 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi926g00003 54 364 Glycoside Hydrolase AT3G07070 50.000 3.08e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi926g00003 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi926g00003 - - gmx:102664409 670.233