Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi926g00002 ATGGGAAACTCATGCAGGAAACCAGTTTCTCATGTGTCTTCAACAAGTATTTTTGGAAGTACAAAGTCTCAAAGTAAGACAAAGAAGTATTCTAAAATTCCTGAACGAAAAGATGCTTTGCAAACTTCAGCATCAAATATTGACAAATCCATCTCCAATAAGCTCAAGTCCTTCACCTTCACTGATCTAAAGGAGGCCACTAATAACTTCAGGCAAGAAAATTTAATTGGGGAGGGAGGATTTGGGTTTGTCTACAAGGGATGGATAGATGAGAACACTTATGCTCCCACAAAACCAGGGACTGGGATTGTAGTTGCCATTAAGAAGCTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAAGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTCAGAAGTGTTCAACCCATTTCTTGGCTTACACGGATCAATATTGCAATTGCTGTTGCAAGAGGATTAACATTCTTACACTCCCTTGATGCAAATGTTATCTACCGTGATTTGAAGGCTTCCAACGTCCTGCTTGATTCGGATTTCAATGCAAAACTCTCTGATTTTGGCTTAGCAAGAGATGGTCCAACTGGAGACAACACTCACGTTTCAACCAGAGTTATTGGAACTCATGGTTATGCTGCACCAGAGTACGTAGCTACAGGTCATTTGACCCCTAGGAGTGATGTATACAGCTTTGGTGTGGTCTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGAGAGACCTGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATTGTAGAAGAATTTTGAGAATCATGGATACCAGGTTGGGTGGTCAATATTCCAAGAAAGGATCCCAAGCTGCAGCTTCACTTGCACTGCAATGCCTGAATACTGATCCCAAACATAGACCACCTATGGTGAATGTTCTAGCTGTATTGGAAGCTCTGCATTCCTCAAATTCAATCCCAAAGACCCCAAAATCTAGAACTGAGAATAATGCAAACAAGCATTCTAGTCATTCCCATAAGTCAGCTGGAAATACTAACAAACTATGA 1167 0.4079 MGNSCRKPVSHVSSTSIFGSTKSQSKTKKYSKIPERKDALQTSASNIDKSISNKLKSFTFTDLKEATNNFRQENLIGEGGFGFVYKGWIDENTYAPTKPGTGIVVAIKKLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCSDGKNKLLVYEFMQKGSLENHLFRSVQPISWLTRINIAIAVARGLTFLHSLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERPGFSEETLVDWARPFLSDCRRILRIMDTRLGGQYSKKGSQAAASLALQCLNTDPKHRPPMVNVLAVLEALHSSNSIPKTPKSRTENNANKHSSHSHKSAGNTNKL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi926g00002 388 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Gabi926g00002 388 Pfam Protein kinase domain 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00002 388 MobiDBLite consensus disorder prediction 357 388 - -
Gabi926g00002 388 SUPERFAMILY Protein kinase-like (PK-like) 52 364 IPR011009 -
Gabi926g00002 388 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Gabi926g00002 388 CDD STKc_IRAK 76 353 - -
Gabi926g00002 388 ProSiteProfiles Protein kinase domain profile. 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00002 388 MobiDBLite consensus disorder prediction 1 27 - -
Gabi926g00002 388 SMART serkin_6 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi926g00002 388 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Gabi926g00002 388 PANTHER OS01G0588500 PROTEIN-RELATED 31 354 - -
Gabi926g00002 388 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 364 - -
Gabi926g00002 388 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Gabi926g00002 388 MobiDBLite consensus disorder prediction 1 35 - -
Gabi926g00002 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi926g00002 Gabi-Chr926 9522 13276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi926g00002 41 350 Glycoside Hydrolase AT3G07070 50.316 1.23e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi926g00002 Pkinase 6.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi926g00002 - - gmx:102664409 656.751