Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi925g00009 ATGACTTTCCCCAAACATGAAGTAGGGCTTTTCAACAAAGTCACTGAATTATCCATTCTATGCGAGGCAGAAATAGCATTGATCATCAACTCTGAGAAGAATGGCAACCTTCATGCTTGTGGCTATCCCAGTACAGACACTGTCATTCAACGCTTCGTTGCAGGAAGGTATTCGGATCCCAACCGATATGTCCGTGATGATGAAAGGAAGAAGCAACAGGCACTTGAATCCTTAATTCTACAATATGAGGCCTCCGAGGCTCAATTGGAGGAGAGAAAGATGCATCTGCAAGCAATGTCACAAATCATGACTGATAGCTTCTTTAACTTTTGGTGGGAAAATTCGATTGAGGAGATGAGTTTGGGCGATCTTGAGAACTTCAAGGCTTCTTTGGAAAATTTGAAGCTTAATTTGGTTGCTATAGCACAAGAGAAGAAGTTCAATTCACTGCGACCACAACCACTTTCAATTGTTTCCTCCCTCACAGATATCAAATCTTGA 501 0.4172 MTFPKHEVGLFNKVTELSILCEAEIALIINSEKNGNLHACGYPSTDTVIQRFVAGRYSDPNRYVRDDERKKQQALESLILQYEASEAQLEERKMHLQAMSQIMTDSFFNFWWENSIEEMSLGDLENFKASLENLKLNLVAIAQEKKFNSLRPQPLSIVSSLTDIKS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi925g00009 166 Gene3D - 1 79 IPR036879 GO:0003677|GO:0046983
Gabi925g00009 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 39 IPR002100 GO:0003677|GO:0046983
Gabi925g00009 166 ProSiteProfiles MADS-box domain profile. 1 34 IPR002100 GO:0003677|GO:0046983
Gabi925g00009 166 Coils Coil 72 92 - -
Gabi925g00009 166 SUPERFAMILY SRF-like 2 54 IPR036879 GO:0003677|GO:0046983
Gabi925g00009 166 Coils Coil 124 144 - -
Gabi925g00009 166 PANTHER MADS BOX PROTEIN 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi925g00009 Gabi-Chr925 188430 188930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi925g00009 1 135 Type I MADS-box Gene Family AT5G60440 33.813 9.38e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi925g00009 SRF-TF 9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi925g00009 - - gsj:114418701 133.265