Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi925g00005 ATGGCAACAAAGCCAAACACACGCAAGAGAAAATTTGAAATCAAGAAAGTGGAACAAAAGATCAAGGAAAGAATGACTTTCCCCAAACATGAAGTAGGGCTTTTCAACAAAGTCACTGAATTATCCATTCTATGCGAGGCAGAAATAGCATTGATCATCAACTCTGAGAAGAATGGCAACCTTCATGCTTGTGGCTATCCCAGTACAGACACTGTCATTCAACGCTTCGTTGCAGGAAGGTATTCGGATCCCAACCGATATGTCCGTGATGATGAAAGGAAGAAGCAACAGGCACTTCAATCCTTAATTCTACAATATGAGGCCTGA 327 0.4159 MATKPNTRKRKFEIKKVEQKIKERMTFPKHEVGLFNKVTELSILCEAEIALIINSEKNGNLHACGYPSTDTVIQRFVAGRYSDPNRYVRDDERKKQQALQSLILQYEA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi925g00005 108 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 SUPERFAMILY SRF-like 8 79 IPR036879 GO:0003677|GO:0046983
Gabi925g00005 108 Gene3D - 19 103 IPR036879 GO:0003677|GO:0046983
Gabi925g00005 108 SMART madsneu2 7 67 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 ProSiteProfiles MADS-box domain profile. 7 58 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
Gabi925g00005 108 PANTHER MADS BOX PROTEIN 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi925g00005 Gabi-Chr925 139814 140140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi925g00005 11 100 MADS-box Gene Family AT2G03710 37.634 5.34e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi925g00005 SRF-TF 2.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi925g00005 - - aip:107627188 105.916