Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi923g00027 ATGGAAACTCCTTTTCTGTGGTTGTTGTTTTCTTATCTTATTCTCTGTGCTTCTGCCACCGATGTTGAATATGACAACTGCAACTGTGATGATGGGGAAGGGATTTGGAGCATACATAGTATACTTGTTGGCCAAAAAGTCAGTGATTTTTTCATTGCTATTGCATATTTTTCCATCCCCATTGAACTCCTTTACTTTGTAAGCCGTTCCAATGTTCCATTCAAATTGCTATTCCTTCAATTTGTGGCCTTCATAGTCCTTTGTGGCTTGACCCATTTACTCAATGCATATTCTTATCACGGCCCTTCCTCCTTTCAGTTGTTGCTTTCCCTTACCGTTGCTAAATTCCTCACTGCTCTTGTCTCATGTGCAACTGCATTGACCCTTCCCCCCCTCATCCCTCTTCTTCTCAAAATCAAAGTCAGGGAGCTCTACTTGAGGCAGAATGTGATGGAATTGGACCAAGAGGTTGGGATAATGAAGAAACAAAAGGAAGCAAGCTGGTATGTTAGGATGCTCACAAGGGAAATTAGGAAGACTCTTGATAAACATACCATCTTGTACACCACACTTGTTGAGCTTTCCAAGACATTGGATTTGCATAATTGTGCAGTTTGGATGCCAAATAAGGACAGAGGAGAAATGCACTTAACCCATGAATTGAAAACAAACTCTGCAAAGTTTTATCGAAATTCTATTCCAGTAAACGACCCTGATGTATTAGAGATAAGAAAAACCAAAGGGGTGAGGATTTTGAGGCCTGAATCTGCACTAGGAGCTGCAAGTAGTGGTGGTGGCCCTGGAGAGTTGGGTGCTGTAGCAGCTATTCGCATGCCCATGCTTCATGTTTCAAATTTCAAAGGAGGGACACCAGAGTTGGTTGAGACATGTTATGCTATACTGGTTTTGGTTCTTCCAAGTTCAAACTCTAGGGTTTGGACTCGCCATGAGATGGAGATAGTTGAAGTAGTTGCTGATCAGGTGGCTGTGGCCTTGTCCCATGCATCTGTTCTTGAAGAGTCTCAGCTAATGAGACAGAAACTAGAAGAGCAAAACCTAGCATTGCAACAGGCTAAAGAGAATGCAATGATGGCAAGTCAGGCAAGGAAGTCGTTTCAGAAAGTGATGAGCCATGTAATGCGGAGGCCTATGCATTCAATTTTGGGGATGCTTTCATTGTTTCAAGAGGAGAATGTGAGATCTGAACAGAAGATTATTGGGGACACAATGTTGAAAGTTGGCAATGTGCTCTCAAGTTTGATTAATGATGTAATGGAGATTTCGGAAAATGATAAGGGAAGTTTTCGGTTAGAGATGAAACCTTTCCTTTTACATTCCATGATGAGGGAAGCTGCTTGCATTGTGAAGTGCTTGTGTGCATATGAAGCCTTTGGTTTTGAAATTAATGTACAGAAGTCTTTACCTGAACTGGTTATAGGCAATGAGGCAAGGGCTTTTCAAGTTATTTTGCATATGGTTGGCTCTTTATTGAATATGTATGACAGAGGGAATCTCATTTTTCGAGTTTTTCTTGTTAGTGACGGTGGAGACAAGGATGATAAAAATTTTGGAATTTGGAGATCAAGCAATCAATATGAATATGTACATATAAAATTTGATTTTCTGATAACTGGTAAGTCTCAGTCAGATGAATCAACTTCAACAAAACATTATACTGGTAGGAGGCAATACTACAACAATGAACCTAAGGAGGGCCTCAGCTTCAGCATGTGCAAAAAGTTGGTACGGATGATGCAAGGTAATATCTGGATATTACCGAACTCTCTGGGTATGGTGCAAGGCATGACACTTCTTCTCAAGTTTCAGATAGGACCATCTCTTGAAAAATCCATATTTGCACCTAAAGATTCTTCAAACTCAGAGTTTAGAGGCCTTAAGGTAGTATTAGCCGATGATGACGGTGTAAACAGGACGGTGACAAAGAAGCTACTTGAGAAGCTTGGTTGTGAAGTAACTGCTGTTTCATCAGGGTTTGAGTGTCTAGGTGCTGTAAGTGGCTCTGGTAACTCATTCAAAATTATTCTCTTGGATCTTGACATGCCCGAAATGGATGGTTTTGAAGTGGCCATGAGGATCCGGAAGTTTCAGAACTATAATTGGCCCTTGATTATTGCTCTCATAGCAAGTGCAGAAGAACATGTGAATGAGAAATGCCTACATGCTGGAATGAATGGATTGATTCGAAAACCTATCCTCCTTCATGAGATAGCAGATGAACTTAGAACATTCCTGCAGCTGAAAAACTCTGAATACAGTTTTAAGTAG 2286 0.4077 METPFLWLLFSYLILCASATDVEYDNCNCDDGEGIWSIHSILVGQKVSDFFIAIAYFSIPIELLYFVSRSNVPFKLLFLQFVAFIVLCGLTHLLNAYSYHGPSSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLKIKVRELYLRQNVMELDQEVGIMKKQKEASWYVRMLTREIRKTLDKHTILYTTLVELSKTLDLHNCAVWMPNKDRGEMHLTHELKTNSAKFYRNSIPVNDPDVLEIRKTKGVRILRPESALGAASSGGGPGELGAVAAIRMPMLHVSNFKGGTPELVETCYAILVLVLPSSNSRVWTRHEMEIVEVVADQVAVALSHASVLEESQLMRQKLEEQNLALQQAKENAMMASQARKSFQKVMSHVMRRPMHSILGMLSLFQEENVRSEQKIIGDTMLKVGNVLSSLINDVMEISENDKGSFRLEMKPFLLHSMMREAACIVKCLCAYEAFGFEINVQKSLPELVIGNEARAFQVILHMVGSLLNMYDRGNLIFRVFLVSDGGDKDDKNFGIWRSSNQYEYVHIKFDFLITGKSQSDESTSTKHYTGRRQYYNNEPKEGLSFSMCKKLVRMMQGNIWILPNSLGMVQGMTLLLKFQIGPSLEKSIFAPKDSSNSEFRGLKVVLADDDGVNRTVTKKLLEKLGCEVTAVSSGFECLGAVSGSGNSFKIILLDLDMPEMDGFEVAMRIRKFQNYNWPLIIALIASAEEHVNEKCLHAGMNGLIRKPILLHEIADELRTFLQLKNSEYSFK 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi923g00027 761 CDD HisKA 366 428 IPR003661 GO:0000155|GO:0007165
Gabi923g00027 761 SUPERFAMILY GAF domain-like 185 335 - -
Gabi923g00027 761 Gene3D - 169 343 IPR029016 -
Gabi923g00027 761 Coils Coil 338 368 - -
Gabi923g00027 761 Pfam Response regulator receiver domain 634 746 IPR001789 GO:0000160
Gabi923g00027 761 FunFam Ethylene receptor 4 335 429 - -
Gabi923g00027 761 Pfam GAF domain 184 332 IPR003018 GO:0005515
Gabi923g00027 761 ProSiteProfiles Response regulatory domain profile. 633 751 IPR001789 GO:0000160
Gabi923g00027 761 Gene3D - 354 433 - -
Gabi923g00027 761 SMART REC_2 632 747 IPR001789 GO:0000160
Gabi923g00027 761 FunFam Ethylene receptor 630 754 - -
Gabi923g00027 761 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 354 433 IPR036097 GO:0000155|GO:0007165
Gabi923g00027 761 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 23 754 - -
Gabi923g00027 761 SUPERFAMILY CheY-like 628 753 IPR011006 -
Gabi923g00027 761 Gene3D - 434 611 IPR036890 -
Gabi923g00027 761 SMART HisKA_10 368 433 IPR003661 GO:0000155|GO:0007165
Gabi923g00027 761 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Gabi923g00027 761 SMART gaf_1 182 342 IPR003018 GO:0005515
Gabi923g00027 761 Gene3D - 615 756 - -
Gabi923g00027 761 CDD REC_ETR-like 632 747 - -
Gabi923g00027 761 CDD HATPase_ETR2_ERS2-EIN4-like 474 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi923g00027 Gabi-Chr923 183315 187397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi923g00027 21 752 Miscellaneous Gene Families AT3G04580 62.097 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi923g00027 GAF 1.9e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi923g00027 K14509 - gmx:100101892 1257.28