Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi923g00021 ATGAAATTTCATTGTAGAGGGGTGATCGATATGTCGAATCCAAAAGTTTTCTTTGACATTCTAATTGGAAAGATGAAAGCTGGGCGAGTTGTAATGGAACTGTTTGCGGATGCCACTCCTAAAACAGCTGAAAACTTCCGAGCCCTGTGCACTGGGGAAAAGGGAATTGGAGTATCTGGGAAGCCTTTGCACTACAAAGGATCCAAATTCCATCGCATTATTCCAGAGTTCATGTGTCAAGGAGGAGATTTTACCAGAGGGAATGGGACTGGAGGAGAGTCAATTTATGGCTCTAAGTTTTCAGATGAGAATTTCAACCTCAAGCATACAGGGCCTGGTATTCTTTCCATGGCCAATTCTGGACCCAATACGAATGGTTCTCAGTTCTTTATTTGCACTGCGAGGACTTCGTGGCTTGATGGAAAACATGTTGTGTTTGGAAAAGTTGTTGATGGCTACAGTGTGGTGAAAGAGATGGAGAAGGTGGGTTCAGCGAGTGGGACGACATCCGAAACTGTTGTAATTGAAGATTGTGGGCAGATAGCAGAGAATTGA 555 0.4378 MKFHCRGVIDMSNPKVFFDILIGKMKAGRVVMELFADATPKTAENFRALCTGEKGIGVSGKPLHYKGSKFHRIIPEFMCQGGDFTRGNGTGGESIYGSKFSDENFNLKHTGPGILSMANSGPNTNGSQFFICTARTSWLDGKHVVFGKVVDGYSVVKEMEKVGSASGTTSETVVIEDCGQIAEN 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi923g00021 184 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 15 181 - -
Gabi923g00021 184 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 65 82 IPR020892 GO:0003755|GO:0006457
Gabi923g00021 184 CDD cyclophilin_ABH_like 14 179 - -
Gabi923g00021 184 SUPERFAMILY Cyclophilin-like 9 181 IPR029000 -
Gabi923g00021 184 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 24 179 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 140 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 34 49 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 156 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 70 82 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 17 180 IPR002130 GO:0000413|GO:0003755
Gabi923g00021 184 FunFam Peptidyl-prolyl cis-trans isomerase 10 182 - -
Gabi923g00021 184 PIRSF Peptidylpro_ismrse 5 184 IPR024936 GO:0003755
Gabi923g00021 184 Gene3D - 7 184 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi923g00021 Gabi-Chr923 138170 139604 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi923g00021 28 162 U-box Gene Family AT5G67530 49.265 8.22e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi923g00021 K01802 - pop:18110579 327.02