Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi923g00008 ATGGCAACACCACCGTCTTTCACGCAATCGCAGTTCGCCTATGCCAACACCACCTACTTCCCTGTGCCCTTTCACCTTCAGCAACCTACAACCCCTCACTACAGTACATCGTACGTCGCGGCTCCGGCTGTACAAATCCCTGCGCCTCCAGTTGTTGGTCCCGTTCTTCCGCCGCCGGTGGCCGGCGTATACTCCGTTCCCCAATATCAGGCACATCAATTATTTGAGAGGGATGCACAGATAATAACACCGGAGGCTCTTGAGAGTGTCAAGGCAGCGATTGCGAGCAGTGACGTCGAGTACAAAGCTGAGACCAAGAAGAAAGCGGTTCCTCGCAAAGCTGCTGGCCAAACTTGGGAGGATCCTGTTCTTGCAGAGTGGCCAGAAGATGATTATCGGCTCTTTTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGGTTCCCTTCCTTTAATAAGGCACGAGTTGTCAGAGATAAGCGGACTGGAAAAACAAAGGGTTATGGATTTATAAGCTTTGCCAATCCTTCTGACCTCGCTGCCGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCAATAAAACTACGCAAAAGCAAGTGGAAAGAGAGGACAGATTACGAGGCACTGGATAAACAGAAGAACCAAATCCAGAAGAAACCGAAACTTCCAAGGAAGGGTGTTCTGCACAAGTGA 723 0.4827 MATPPSFTQSQFAYANTTYFPVPFHLQQPTTPHYSTSYVAAPAVQIPAPPVVGPVLPPPVAGVYSVPQYQAHQLFERDAQIITPEALESVKAAIASSDVEYKAETKKKAVPRKAAGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNKARVVRDKRTGKTKGYGFISFANPSDLAAALKEMNGKYVGNRPIKLRKSKWKERTDYEALDKQKNQIQKKPKLPRKGVLHK 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi923g00008 240 MobiDBLite consensus disorder prediction 212 227 - -
Gabi923g00008 240 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 220 - -
Gabi923g00008 240 SUPERFAMILY RNA-binding domain, RBD 115 212 IPR035979 GO:0003676
Gabi923g00008 240 SMART rrm1_1 133 206 IPR000504 GO:0003723
Gabi923g00008 240 CDD RRM_RBM42 126 208 IPR034215 -
Gabi923g00008 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Gabi923g00008 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Gabi923g00008 240 Gene3D - 83 224 IPR012677 -
Gabi923g00008 240 FunFam RNA-binding protein 42 67 217 - -
Gabi923g00008 240 MobiDBLite consensus disorder prediction 212 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi923g00008 Gabi-Chr923 52420 56819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi923g00008 134 232 Eukaryotic Initiation Factors Gene Family AT1G71770 27.000 1.59e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi923g00008 K25079 - gmx:100807693 398.667