Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi913g00009 ATGTTTGATGGTTACCAGCATTTGGTGAAGGCTTCACCACCTGCAAGAGCACAATCACCTTTGAAATATAGGAGTGTATCTTCACGCATGTTAGTGGGATTTATTGCAGGCATTTCAACAGTAATGGCAGTGGCCTTAGTATACTACCTCTGCAGGAGAAAGGTCATTCCATTTCTTAAGAAACCTAATAAGACTTTGAAAGGAAAGAGATATAATAGCTTGAAATATGACAAAATATTGTTAAGGCATTTTGATTTTGAGGAGCTAGTGAGGGCTACCAAAAATTTTAGCCAAGAATGCTTTCTGGGTTCTGGTGCATTTGGAAATGTCTACAAGGGAAACTTTGACTTAGAAGGAACACTAGCCATTAAGAGATCTCATTCTGAATCATTTTTAAGTATTGAAGAATTCAGAAATGAAGTTAGGCTCCTTTCAGCAGTAAAGCACAGGAATCTTATTGGTTTGGTTGGATATTGTGAAGAACCAGATCGAGATGGATCCAAAATACTAGTTTATGAATATGCACCAAATGGTTCACTGCTTGAGTACATGATGGGAAACAGAAGGAGGAGCTTAACTTGGAAGCAAAGAGTGAAAATAGCAATCGGAGCAGCTAGAGGCATAGCTTATTTGCATGAAGGGGTGAAACCAAGCATAATTCATCGTGACATCAAACCAAGTAACATCCTAATAGGGGAAGGTTTTGAGGCAAAGGTTTCAGATTTTGGGCTTGTTAAATCAGGACCTACTGGGGATCAATCACATGTCAGTAGCCAAGTCAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGAATAACACTGAAAACCAAAGCAAACAACATATTATTGACTGGGCAAGGCCTAGCTTAGAGAAGGGTAATGTTGAAGAAATCATTGATGCAAATCTACTATGTCTAAGTAAGCCATGCAATATGAAAGTTATGTTAAAGATGGGGCAACTTGGTTTAAGATGTGTGGTTCAAGAACCAAAACATCGCCCTACAATGTCCCAGGTGTGTCAAGAATTAGAGCAAGCCCTCTACTCAGTTGATAGCTTCAATAGCAAGCGATCTTCTAAAGGTTTGCTTAGATCAATTGGCTCATCCAAGCAATCAGCAGATTCCGAGACACAGGGGTCAGGGGAACACAACAATTGTTCAGAGAGTTTTGTGAGCATAGACGGTGTTGGATTTGAGACATTCCATATTGATATGGATAGCTTCTCCTTTCAGAGCACAAACTTAATGTGTCTAGAAAATAATAGTGTCAGTATTGACACTGACAAGAACAATTTAAGAATACAAGAGGATGACACCAAGTAA 1410 0.3943 MFDGYQHLVKASPPARAQSPLKYRSVSSRMLVGFIAGISTVMAVALVYYLCRRKVIPFLKKPNKTLKGKRYNSLKYDKILLRHFDFEELVRATKNFSQECFLGSGAFGNVYKGNFDLEGTLAIKRSHSESFLSIEEFRNEVRLLSAVKHRNLIGLVGYCEEPDRDGSKILVYEYAPNGSLLEYMMGNRRRSLTWKQRVKIAIGAARGIAYLHEGVKPSIIHRDIKPSNILIGEGFEAKVSDFGLVKSGPTGDQSHVSSQVKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPVVNNTENQSKQHIIDWARPSLEKGNVEEIIDANLLCLSKPCNMKVMLKMGQLGLRCVVQEPKHRPTMSQVCQELEQALYSVDSFNSKRSSKGLLRSIGSSKQSADSETQGSGEHNNCSESFVSIDGVGFETFHIDMDSFSFQSTNLMCLENNSVSIDTDKNNLRIQEDDTK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi913g00009 469 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 416 - -
Gabi913g00009 469 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 175 379 - -
Gabi913g00009 469 Pfam Protein tyrosine and serine/threonine kinase 101 372 IPR001245 GO:0004672|GO:0006468
Gabi913g00009 469 FunFam Putative LRR receptor-like serine/threonine-protein kinase 65 174 - -
Gabi913g00009 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi913g00009 469 Gene3D Transferase(Phosphotransferase) domain 1 175 392 - -
Gabi913g00009 469 SUPERFAMILY Protein kinase-like (PK-like) 74 373 IPR011009 -
Gabi913g00009 469 CDD STKc_IRAK 102 374 - -
Gabi913g00009 469 SMART serkin_6 96 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi913g00009 469 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi913g00009 469 MobiDBLite consensus disorder prediction 393 415 - -
Gabi913g00009 469 Gene3D Phosphorylase Kinase; domain 1 60 174 - -
Gabi913g00009 469 ProSitePatterns Protein kinases ATP-binding region signature. 102 124 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi913g00009 Gabi-Chr913 149985 152361 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi913g00009 80 376 Receptor kinase-like Gene Family AT3G51550 45.638 9.73e-79 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gabi913g00009 PK_Tyr_Ser-Thr 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi913g00009 - - var:108328541 684.871