Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi913g00004 ATGGCCGATTCTCCTCTTCGAAGGAATTCAAGATCCCCTTCCCCATGGAAAGCTCAGTCAAGATCGAGATCAAGGTCTAGATCTAGGTCGAGGTCGAGGTCTAAGCCAAGACAAAGGCCAATATCCCATTCAAGAAGTCGTGGCAGATCAAGGTCAAGAAGTCCTGGAAGGACTGAAATTTCAAATCCTGGCAATACTCTTTATGTAACTGGTCTATCTTCAAGGGTCACCGAGAGGGACCTAGAGGATCATTTCTCCAAGGAGGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCTCGTACTCGTGTTTCTCGTGGTTTTGCTTTTGTTACAATGGATTGTGTTGAGGATGCGGACCGTTGCATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGCGCAAGAACTCCAACACCAGGACACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTATCGTGGTGGTGACCGAGGAAGGTATCATGGTGGTTCAGGTCGTGACGATCGTAGGTCTCCAAGACGTTCACCATATCGAGGAGGCCAAGATTATTCACCACGGCACTCACCTTATGGTGGAAGATCTAGGAGGGATAGATCTAGGTCGCTTCCATATTCTCCATATGGTAGTCCAGAGAGGAAGTATGCTCGTGGACCTAGGTGA 699 0.4735 MADSPLRRNSRSPSPWKAQSRSRSRSRSRSRSRSKPRQRPISHSRSRGRSRSRSPGRTEISNPGNTLYVTGLSSRVTERDLEDHFSKEGKVASCFLVVEPRTRVSRGFAFVTMDCVEDADRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGYRGGDRGRYHGGSGRDDRRSPRRSPYRGGQDYSPRHSPYGGRSRRDRSRSLPYSPYGSPERKYARGPR 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi913g00004 232 MobiDBLite consensus disorder prediction 1 21 - -
Gabi913g00004 232 MobiDBLite consensus disorder prediction 141 232 - -
Gabi913g00004 232 SUPERFAMILY RNA-binding domain, RBD 60 173 IPR035979 GO:0003676
Gabi913g00004 232 MobiDBLite consensus disorder prediction 22 51 - -
Gabi913g00004 232 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 149 - -
Gabi913g00004 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Gabi913g00004 232 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 51 214 - -
Gabi913g00004 232 Gene3D - 7 149 IPR012677 -
Gabi913g00004 232 SMART rrm1_1 66 139 IPR000504 GO:0003723
Gabi913g00004 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 136 IPR000504 GO:0003723
Gabi913g00004 232 MobiDBLite consensus disorder prediction 1 67 - -
Gabi913g00004 232 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi913g00004 Gabi-Chr913 51699 54449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi913g00004 64 147 Eukaryotic Initiation Factors Gene Family AT1G49760 34.524 8.23e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi913g00004 K12897 - gmx:100800398 300.827