LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi913g00002	ATGAATTTTAGTTCTCTAGAGAATGCTTTCTCTTTACCAAAGTCACTTTTGCCAAATGAAGCATCACCCGAGTGGAACAACAAGGCAGATAATGCATGGCAACTAACTGCAGCAACATTAGTGGGCCTTCAAAGTGTTCCCGGGCTTGTTGTACTTTATGGTAGCATGGTTAAAAGAAAATGGGCCGTGAATTCTGCTTTCATGGCCCTCTATGCTTTTGCTGCTGTACTTGTTTGTTGGGTCATGTGGGCCCATAGAATGGCATTTGGGACCAAGCTTATGCCATTTGTGGGAAAGCCCAATCATGCTTTGGCTGATGGGTTTTTACTTGCTAAGTCAATACATGGTTCTTTTCCAATGGCTGACTTTGTACTATATCAATTTGCTTTTGCTGCAATTACTGTCGTGTTGCTTGCTGGGTCTTTGCTTGGGAGAATGAATTTCCATGCATGGATGCTGTTTGTGCCTATGTGGCTTACACTTTCTTACACCATTGGTGCCTTCAGTATATGGGGCAATGGCTTCCTTCAACCAAAAATAATTGATTATGCTGGTGGCTTTGTCATTCATCTATCTTCTGGCGTCGCAGGTTTCACGGCTGCTTATTGGGTTGGTCCAAGAATTTCGCATGACAGGCAAAACTTCCCACCAAATAATATAATTCACATGCTTGGAGGTGCAGGGTTTCTATGGATGGGTTGGACAGGTTTTAATGGTGGGGCTCCATTTCAAGTGGGAGAGACTGCATCCTTGGCAATCTTCAACACTCATCTATGCACTGCCACAAGCCTACTTGTTTGGCTTTCCCTTGACATGATTGTATATCACAAGAGCTCAGTCATAGGTGCTGTCCAGGGAATGATCACTGGCCTTGTTTGCATCACACCAGGTGCAGGGTTGGTGGATTCATGGGCAGCAGTATTGATGGGAGCTTCGTCTGGTTCTATTCCATGGTACACCATGATGGTGTTGCATAGGAGATCAACGTTTTTTCAAAGCGTGGATGATACATTAGGAGTTTTTCACACTCATGCTGTGGCTGGTATTCTTGGGGGTCTCCTTTCTGGTGTGTTTGCCAAACCCAAACTTTTGAGGATGATGTATGGCCCTGGAATGCCTTATGGTCCTGGTTTATTCTATAGCTTTTTTGAAGACAAATTGGGTCAAGGGTTCAAGCAAATATGGTACCAGTTACTAGGAGCAGCTTTTGTTACTGTTTGGAATGCCATTGTTACTAGCATCATCTGTATTCTTATAAGCCGCATTGTTGATCTTAGGATGCAGGAAGAGGATCTTGAAGTTGGTGATGATGCTGTTCATGGGGAAGAAGCTTATGCATTGTGGGGAGATGGAGAGAGAATGCGATTCCCTATTCGTCTTCACATAAGTCCTACAATTCCTTCCATATGCCGGCGAAGGACTTCGATTCCTGTCACTATAAATGAAATGGAAGAATAG	1458	0.4383	MNFSSLENAFSLPKSLLPNEASPEWNNKADNAWQLTAATLVGLQSVPGLVVLYGSMVKRKWAVNSAFMALYAFAAVLVCWVMWAHRMAFGTKLMPFVGKPNHALADGFLLAKSIHGSFPMADFVLYQFAFAAITVVLLAGSLLGRMNFHAWMLFVPMWLTLSYTIGAFSIWGNGFLQPKIIDYAGGFVIHLSSGVAGFTAAYWVGPRISHDRQNFPPNNIIHMLGGAGFLWMGWTGFNGGAPFQVGETASLAIFNTHLCTATSLLVWLSLDMIVYHKSSVIGAVQGMITGLVCITPGAGLVDSWAAVLMGASSGSIPWYTMMVLHRRSTFFQSVDDTLGVFHTHAVAGILGGLLSGVFAKPKLLRMMYGPGMPYGPGLFYSFFEDKLGQGFKQIWYQLLGAAFVTVWNAIVTSIICILISRIVDLRMQEEDLEVGDDAVHGEEAYALWGDGERMRFPIRLHISPTIPSICRRRTSIPVTINEMEE	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi913g00002	485	Pfam	Ammonium Transporter Family	32	445	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Gabi913g00002	485	SUPERFAMILY	Ammonium transporter	25	426	-	-
	Gabi913g00002	485	FunFam	Ammonium transporter	15	448	-	-
	Gabi913g00002	485	PANTHER	AMMONIUM TRANSPORTER MEP2	15	454	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gabi913g00002	485	PRINTS	Rhesus blood group protein signature	127	143	IPR002229	GO:0005886
	Gabi913g00002	485	PRINTS	Rhesus blood group protein signature	252	274	IPR002229	GO:0005886
	Gabi913g00002	485	PRINTS	Rhesus blood group protein signature	221	239	IPR002229	GO:0005886
	Gabi913g00002	485	PRINTS	Rhesus blood group protein signature	345	361	IPR002229	GO:0005886
	Gabi913g00002	485	Gene3D	Ammonium transporter AmtB like domains	13	448	IPR029020	-
	Gabi913g00002	485	NCBIfam	ammonium transporter	30	445	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gabi913g00002	485	ProSitePatterns	Ammonium transporters signature.	182	207	IPR018047	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi913g00002	Gabi-Chr913	24753	28730	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi913g00002	120	453	Inorganic Solute Cotransporters	AT2G38290	59.701	1.69e-137	399

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi913g00002	K03320		-	gmx:100815876	830.476