Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi908g00013 ATGTTACTGTTGTTGGTTTTTGTTGTTACTTTGGGTAATTCTTTATTGCGTTTTGTTGATATAATCAAATCTTCGTTTCTTCTTCAGTATGATGAAATGCTGGGGAAAGGAGCCTTCAAGACTGTGTATGCCAATTTAGTGAATAACGCATTTGTTTTCTTTTGGTACTTTTTTTTTATTTCTTTGATTTTTTATTTATTTATTGATTTATTACCTTGTTGTAGATATAAGGCGTTTGATGAAGTAGGTGGAATAGAAGTTGCATGGAACCAAATCAATATTGAGGATGTTTTGCAGTCACCACAAGAGTTTGAAAAGTTGTATTCGGAGATTCATCTGCTCAAGTCTTTGAAACATGAAAATATCATTAAGCTCTATAATTCTTGGGTGGATGATAAGGCAAGGACTATTAACATGATAACTGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTTGATATGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGTTTATGCTTTCTGCATAGTCATAGTCCTCCTGTTATTCATAGGGACCTGAAATGTGATAATATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTTGGGTTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGCACACCAGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATATGATGAACTTGTTGACATATATTCCTTTGGCATGTGTATGCTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGTAGAAATCCGGCACAGATATATAAAAAAGTTACTTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTATGCTGAAGCAATTTATAGAAAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCCGAACTACTGAAAGACCCATTCCTTGCAACCGAAAATGCAAAGGAGATCAAACACGATACATTGCAGCTGCCTAATTCCCCCACCAAATTGGTGAATCCACCAACATGTGAACCTCATCCCATGGAGATAGATTCAAACTTCAGGCATACTTCACCTGGCTCCTCTGTGAGAAGGATTGAAGAAACTTCTCATGTTTCAGTTTTTGATCTCTTGAGGGTAACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAGAAATTCTGACAGTACTATTTCACTTACGCTGCGAATTGCTGATGCACATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGTATCTGATACAGTAATTTCAATTGCTGAGGAGATGGTAGAACATCTGGAACTAAAAAATGAGGACGTAGCTGTCATTGCTGAGCTAATACACAACATGATTGTTAAACTTGTGCCCAACTGGAAACCTTTATTTGAGAATCTCTCATCTGGAATAGATCGTTTATACTGGCCTTCTTCTGAAGTTCAGAATGGTGAAACATTAAACTGCCATTGGCCATCACAATCAAGTGATTTTGATATGAGGGCAATTGATAAGGATTTATTTTGCTCACGGCTTGTCGATGGGGAAGAACAGGAGAAACAAGAATCTGTTATTTCTGATATTTCAGCGGAGTATGGGATTACAATTGCCTCAGATTCTAAAGTTGTGGAGCCTGATTTTCTTTTTCTTCATGAATGCTGCGAGAGATCCAATGGCTTCAATTCCAATTCAGGTGTCAGGTTTTGTGGTCAAGAAGATGGACACAGGAATCAATCAGAGAACTCAGCAGGGTCTTTAATCAATTTGTGTTGCAGTCCATCCAAAAACTTTGATATGTCAAGCACGTGTTCCCTTACTCTAGCTGACAATGATAATTCAAACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCATCAGTGCTTTCGTGAGCTTGAGAAGATGAGGGAGCAAGCCATGGAAAACGCCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTTATATGA 1989 0.3861 MLLLLVFVVTLGNSLLRFVDIIKSSFLLQYDEMLGKGAFKTVYANLVNNAFVFFWYFFFISLIFYLFIDLLPCCRYKAFDEVGGIEVAWNQINIEDVLQSPQEFEKLYSEIHLLKSLKHENIIKLYNSWVDDKARTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYDELVDIYSFGMCMLEMITCEYPYSECRNPAQIYKKVTSGIKPAALAKVNDPMLKQFIEKCLVPASMRLSASELLKDPFLATENAKEIKHDTLQLPNSPTKLVNPPTCEPHPMEIDSNFRHTSPGSSVRRIEETSHVSVFDLLRVTENNEFRLRGERNSDSTISLTLRIADAHGGARNIHFPFYIVSDTVISIAEEMVEHLELKNEDVAVIAELIHNMIVKLVPNWKPLFENLSSGIDRLYWPSSEVQNGETLNCHWPSQSSDFDMRAIDKDLFCSRLVDGEEQEKQESVISDISAEYGITIASDSKVVEPDFLFLHECCERSNGFNSNSGVRFCGQEDGHRNQSENSAGSLINLCCSPSKNFDMSSTCSLTLADNDNSNELQLELEAIETQYHQCFRELEKMREQAMENAKRRWITRKKISVI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi908g00013 662 Gene3D - 399 482 - -
Gabi908g00013 662 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 28 647 - -
Gabi908g00013 662 ProSiteProfiles Protein kinase domain profile. 28 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00013 662 SUPERFAMILY Protein kinase-like (PK-like) 76 367 IPR011009 -
Gabi908g00013 662 Gene3D Phosphorylase Kinase; domain 1 17 142 - -
Gabi908g00013 662 CDD STKc_WNK 28 318 - -
Gabi908g00013 662 FunFam Probable serine/threonine-protein kinase WNK1 73 142 - -
Gabi908g00013 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Gabi908g00013 662 Pfam Protein kinase domain 76 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00013 662 FunFam probable serine/threonine-protein kinase WNK9 144 323 - -
Gabi908g00013 662 SMART serkin_6 28 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00013 662 Coils Coil 624 644 - -
Gabi908g00013 662 Gene3D Transferase(Phosphotransferase) domain 1 144 326 - -
Gabi908g00013 662 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 401 457 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi908g00013 Gabi-Chr908 142802 146011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi908g00013 18 661 MAP Kinase Kinase Kinase AT5G41990 49.379 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi908g00013 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi908g00013 K08867 - gmx:100783717 923.309