Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi908g00012 ATGTTACTGTTGTTGGTTTTTGTTGTTACTTTGGGTAATTCTTTATTGCGTTTTGTTGATATAATCAAATCTTCGTTTCTTCTTCAGTATGATGAAATGCTGGGGAAAGGAGCCTTCAAGACTGTATATAAGGCGTTTGATGAAGTAGGTGGAATAGAAGTTGCATGGAACCAAATCAATATTGAGGATGTTTTGCAGTCACCACAAGAGTTTGAAAAGTTGTATTCGGAGATTCATCTGCTCAAGTCTTTGAAACATGAAAATATCATTAAGCTCTATAATTCTTGGGTGGATGATAAGGCAAGGACTATTAACATGATAACTGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTTGATATGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGTTTATGCTTTCTGCATAGTCATAGTCCTCCTGTTATTCATAGGGACCTGAAATGTGATAATATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTTGGGTTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGCACACCAGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATATGATGAACTTGTTGACATATATTCCTTTGGCATGTGTATGCTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGTAGAAATCCGGCACAGATATATAAAAAAGTTACTTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTATGCTGAAGCAATTTATAGAAAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCCGAACTACTGAAAGACCCATTCCTTGCAACCGAAAATGCAAAGGAGATCAAACACGATACATTGCAGCTGCCTAATTCCCCCACCAAATTGGTGAATCCACCAACATGTGAACCTCATCCCATGGAGATAGATTCAAACTTCAGGCATACTTCACCTGGCTCCTCTGTGAGAAGGATTGAAGAAACTTCTCATGTTTCAGTTTTTGATCTCTTGAGGGTAACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAGAAATTCTGACAGTACTATTTCACTTACGCTGCGAATTGCTGATGCACATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGTATCTGATACAGTAATTTCAATTGCTGAGGAGATGGTAGAACATCTGGAACTAAAAAATGAGGACGTAGCTGTCATTGCTGAGCTAATACACAACATGATTGTTAAACTTGTGCCCAACTGGAAACCTTTATTTGAGAATCTCTCATCTGGAATAGATCGTTTATACTGGCCTTCTTCTGAAGTTCAGAATGGTGAAACATTAAACTGCCATTGGCCATCACAATCAAGTGATTTTGATATGAGGGCAATTGATAAGGATTTATTTTGCTCACGGCTTGTCGATGGGGAAGAACAGGAGAAACAAGAATCTGTTATTTCTGATATTTCAGCGGAGTATGGGATTACAATTGCCTCAGATTCTAAAGTTGTGGAGCCTGATTTTCTTTTTCTTCATGAATGCTGCGAGAGATCCAATGGCTTCAATTCCAATTCAGGTGTCAGGTTTTGTGGTCAAGAAGATGGACACAGGAATCAATCAGAGAACTCAGCAGGGTCTTTAATCAATTTGTGTTGCAGTCCATCCAAAAACTTTGATATGTCAAGCACGTGTTCCCTTACTCTAGCTGACAATGATAATTCAAACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCATCAGTGCTTTCGTGAGCTTGAGAAGATGAGGGAGCAAGCCATGGAAAACGCCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTTATATGA 1890 0.3947 MLLLLVFVVTLGNSLLRFVDIIKSSFLLQYDEMLGKGAFKTVYKAFDEVGGIEVAWNQINIEDVLQSPQEFEKLYSEIHLLKSLKHENIIKLYNSWVDDKARTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYDELVDIYSFGMCMLEMITCEYPYSECRNPAQIYKKVTSGIKPAALAKVNDPMLKQFIEKCLVPASMRLSASELLKDPFLATENAKEIKHDTLQLPNSPTKLVNPPTCEPHPMEIDSNFRHTSPGSSVRRIEETSHVSVFDLLRVTENNEFRLRGERNSDSTISLTLRIADAHGGARNIHFPFYIVSDTVISIAEEMVEHLELKNEDVAVIAELIHNMIVKLVPNWKPLFENLSSGIDRLYWPSSEVQNGETLNCHWPSQSSDFDMRAIDKDLFCSRLVDGEEQEKQESVISDISAEYGITIASDSKVVEPDFLFLHECCERSNGFNSNSGVRFCGQEDGHRNQSENSAGSLINLCCSPSKNFDMSSTCSLTLADNDNSNELQLELEAIETQYHQCFRELEKMREQAMENAKRRWITRKKISVI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi908g00012 629 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 368 424 IPR024678 GO:0004674|GO:0005524
Gabi908g00012 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 28 614 - -
Gabi908g00012 629 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00012 629 FunFam probable serine/threonine-protein kinase WNK9 111 290 - -
Gabi908g00012 629 SMART serkin_6 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00012 629 ProSiteProfiles Protein kinase domain profile. 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00012 629 SUPERFAMILY Protein kinase-like (PK-like) 31 335 IPR011009 -
Gabi908g00012 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Gabi908g00012 629 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Gabi908g00012 629 Coils Coil 591 611 - -
Gabi908g00012 629 Gene3D - 366 449 - -
Gabi908g00012 629 CDD STKc_WNK 28 285 - -
Gabi908g00012 629 Gene3D Phosphorylase Kinase; domain 1 17 109 - -
Gabi908g00012 629 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi908g00012 Gabi-Chr908 142802 146011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi908g00012 18 628 MAP Kinase Kinase Kinase AT5G41990 51.882 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi908g00012 Pkinase 6.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi908g00012 K08867 - gmx:100783717 940.258