Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi908g00011 ATGGATTCTGAGACCGGTGATGATGTTGGTGTTGTGGAGAAAGATCCAAGTTCGCGTTACGCACGGTATGATGAAATGCTGGGGAAAGGAGCCTTCAAGACTGTATATAAGGCGTTTGATGAAGTAGGTGGAATAGAAGTTGCATGGAACCAAATCAATATTGAGGATGTTTTGCAGTCACCACAAGAGTTTGAAAAGTTGTATTCGGAGATTCATCTGCTCAAGTCTTTGAAACATGAAAATATCATTAAGCTCTATAATTCTTGGGTGGATGATAAGGCAAGGACTATTAACATGATAACTGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTTGATATGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGTTTATGCTTTCTGCATAGTCATAGTCCTCCTGTTATTCATAGGGACCTGAAATGTGATAATATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTTGGGTTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGCACACCAGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATATGATGAACTTGTTGACATATATTCCTTTGGCATGTGTATGCTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGTAGAAATCCGGCACAGATATATAAAAAAGTTACTTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTATGCTGAAGCAATTTATAGAAAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCCGAACTACTGAAAGACCCATTCCTTGCAACCGAAAATGCAAAGGAGATCAAACACGATACATTGCAGCTGCCTAATTCCCCCACCAAATTGGTGAATCCACCAACATGTGAACCTCATCCCATGGAGATAGATTCAAACTTCAGGCATACTTCACCTGGCTCCTCTGTGAGAAGGATTGAAGAAACTTCTCATGTTTCAGTTTTTGATCTCTTGAGGGTAACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAGAAATTCTGACAGTACTATTTCACTTACGCTGCGAATTGCTGATGCACATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGTATCTGATACAGTAATTTCAATTGCTGAGGAGATGGTAGAACATCTGGAACTAAAAAATGAGGACGTAGCTGTCATTGCTGAGCTAATACACAACATGATTGTTAAACTTGTGCCCAACTGGAAACCTTTATTTGAGAATCTCTCATCTGGAATAGATCGTTTATACTGGCCTTCTTCTGAAGTTCAGAATGGTGAAACATTAAACTGCCATTGGCCATCACAATCAAGTGATTTTGATATGAGGGCAATTGATAAGGATTTATTTTGCTCACGGCTTGTCGATGGGGAAGAACAGGAGAAACAAGAATCTGTTATTTCTGATATTTCAGCGGAGTATGGGATTACAATTGCCTCAGATTCTAAAGTTGTGGAGCCTGATTTTCTTTTTCTTCATGAATGCTGCGAGAGATCCAATGGCTTCAATTCCAATTCAGGTGTCAGGTTTTGTGGTCAAGAAGATGGACACAGGAATCAATCAGAGAACTCAGCAGGGTCTTTAATCAATTTGTGTTGCAGTCCATCCAAAAACTTTGATATGTCAAGCACGTGTTCCCTTACTCTAGCTGACAATGATAATTCAAACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCATCAGTGCTTTCGTGAGCTTGAGAAGATGAGGGAGCAAGCCATGGAAAACGCCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTTATATGA 1869 0.4029 MDSETGDDVGVVEKDPSSRYARYDEMLGKGAFKTVYKAFDEVGGIEVAWNQINIEDVLQSPQEFEKLYSEIHLLKSLKHENIIKLYNSWVDDKARTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYDELVDIYSFGMCMLEMITCEYPYSECRNPAQIYKKVTSGIKPAALAKVNDPMLKQFIEKCLVPASMRLSASELLKDPFLATENAKEIKHDTLQLPNSPTKLVNPPTCEPHPMEIDSNFRHTSPGSSVRRIEETSHVSVFDLLRVTENNEFRLRGERNSDSTISLTLRIADAHGGARNIHFPFYIVSDTVISIAEEMVEHLELKNEDVAVIAELIHNMIVKLVPNWKPLFENLSSGIDRLYWPSSEVQNGETLNCHWPSQSSDFDMRAIDKDLFCSRLVDGEEQEKQESVISDISAEYGITIASDSKVVEPDFLFLHECCERSNGFNSNSGVRFCGQEDGHRNQSENSAGSLINLCCSPSKNFDMSSTCSLTLADNDNSNELQLELEAIETQYHQCFRELEKMREQAMENAKRRWITRKKISVI 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi908g00011 622 SUPERFAMILY Protein kinase-like (PK-like) 24 328 IPR011009 -
Gabi908g00011 622 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 361 417 IPR024678 GO:0004674|GO:0005524
Gabi908g00011 622 Coils Coil 584 604 - -
Gabi908g00011 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Gabi908g00011 622 SMART serkin_6 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00011 622 Pfam Protein kinase domain 24 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00011 622 FunFam probable serine/threonine-protein kinase WNK9 104 283 - -
Gabi908g00011 622 CDD STKc_WNK 19 278 - -
Gabi908g00011 622 Gene3D - 359 442 - -
Gabi908g00011 622 ProSiteProfiles Protein kinase domain profile. 21 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00011 622 Gene3D Phosphorylase Kinase; domain 1 5 102 - -
Gabi908g00011 622 FunFam Probable serine/threonine-protein kinase WNK1 6 102 - -
Gabi908g00011 622 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Gabi908g00011 622 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi908g00011 Gabi-Chr908 142802 146011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi908g00011 7 621 MAP Kinase Kinase Kinase AT5G41990 52.520 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi908g00011 Pkinase 7.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi908g00011 K08867 - gmx:100783717 957.977