Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi908g00010 ATGATGTTGGTGTTGTGGAGAAAGATCCAAGTTCGCGTTACGCACGGATATAAGGCGTTTGATGAAGTAGGTGGAATAGAAGTTGCATGGAACCAAATCAATATTGAGGATGTTTTGCAGTCACCACAAGAGTTTGAAAAGTTGTATTCGGAGATTCATCTGCTCAAGTCTTTGAAACATGAAAATATCATTAAGCTCTATAATTCTTGGGTGGATGATAAGGCAAGGACTATTAACATGATAACTGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTTGATATGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGTTTATGCTTTCTGCATAGTCATAGTCCTCCTGTTATTCATAGGGACCTGAAATGTGATAATATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTTGGGTTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGCACACCAGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATATGATGAACTTGTTGACATATATTCCTTTGGCATGTGTATGCTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGTAGAAATCCGGCACAGATATATAAAAAAGTTACTTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTATGCTGAAGCAATTTATAGAAAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCCGAACTACTGAAAGACCCATTCCTTGCAACCGAAAATGCAAAGGAGATCAAACACGATACATTGCAGCTGCCTAATTCCCCCACCAAATTGGTGAATCCACCAACATGTGAACCTCATCCCATGGAGATAGATTCAAACTTCAGGCATACTTCACCTGGCTCCTCTGTGAGAAGGATTGAAGAAACTTCTCATGTTTCAGTTTTTGATCTCTTGAGGGTAACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAGAAATTCTGACAGTACTATTTCACTTACGCTGCGAATTGCTGATGCACATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGTATCTGATACAGTAATTTCAATTGCTGAGGAGATGGTAGAACATCTGGAACTAAAAAATGAGGACGTAGCTGTCATTGCTGAGCTAATACACAACATGATTGTTAAACTTGTGCCCAACTGGAAACCTTTATTTGAGAATCTCTCATCTGGAATAGATCGTTTATACTGGCCTTCTTCTGAAGTTCAGAATGGTGAAACATTAAACTGCCATTGGCCATCACAATCAAGTGATTTTGATATGAGGGCAATTGATAAGGATTTATTTTGCTCACGGCTTGTCGATGGGGAAGAACAGGAGAAACAAGAATCTGTTATTTCTGATATTTCAGCGGAGTATGGGATTACAATTGCCTCAGATTCTAAAGTTGTGGAGCCTGATTTTCTTTTTCTTCATGAATGCTGCGAGAGATCCAATGGCTTCAATTCCAATTCAGGTGTCAGGTTTTGTGGTCAAGAAGATGGACACAGGAATCAATCAGAGAACTCAGCAGGGTCTTTAATCAATTTGTGTTGCAGTCCATCCAAAAACTTTGATATGTCAAGCACGTGTTCCCTTACTCTAGCTGACAATGATAATTCAAACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCATCAGTGCTTTCGTGAGCTTGAGAAGATGAGGGAGCAAGCCATGGAAAACGCCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTTATATGA 1812 0.4007 MMLVLWRKIQVRVTHGYKAFDEVGGIEVAWNQINIEDVLQSPQEFEKLYSEIHLLKSLKHENIIKLYNSWVDDKARTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYDELVDIYSFGMCMLEMITCEYPYSECRNPAQIYKKVTSGIKPAALAKVNDPMLKQFIEKCLVPASMRLSASELLKDPFLATENAKEIKHDTLQLPNSPTKLVNPPTCEPHPMEIDSNFRHTSPGSSVRRIEETSHVSVFDLLRVTENNEFRLRGERNSDSTISLTLRIADAHGGARNIHFPFYIVSDTVISIAEEMVEHLELKNEDVAVIAELIHNMIVKLVPNWKPLFENLSSGIDRLYWPSSEVQNGETLNCHWPSQSSDFDMRAIDKDLFCSRLVDGEEQEKQESVISDISAEYGITIASDSKVVEPDFLFLHECCERSNGFNSNSGVRFCGQEDGHRNQSENSAGSLINLCCSPSKNFDMSSTCSLTLADNDNSNELQLELEAIETQYHQCFRELEKMREQAMENAKRRWITRKKISVI 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi908g00010 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Gabi908g00010 603 SUPERFAMILY Protein kinase-like (PK-like) 17 309 IPR011009 -
Gabi908g00010 603 CDD STKc_WNK 17 259 - -
Gabi908g00010 603 Gene3D - 340 424 - -
Gabi908g00010 603 Gene3D Phosphorylase Kinase; domain 1 10 83 - -
Gabi908g00010 603 ProSiteProfiles Protein kinase domain profile. 1 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00010 603 Coils Coil 565 585 - -
Gabi908g00010 603 FunFam probable serine/threonine-protein kinase WNK9 85 264 - -
Gabi908g00010 603 Gene3D Transferase(Phosphotransferase) domain 1 85 267 - -
Gabi908g00010 603 FunFam Probable serine/threonine-protein kinase WNK1 9 83 - -
Gabi908g00010 603 SMART serkin_6 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00010 603 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 17 588 - -
Gabi908g00010 603 Pfam Protein kinase domain 17 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00010 603 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 398 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi908g00010 Gabi-Chr908 142802 146011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi908g00010 17 602 MAP Kinase Kinase Kinase AT5G41990 52.048 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi908g00010 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi908g00010 K08867 - gmx:100783717 914.835