Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi908g00009 ATGGATTCTGAGACCGGTGATGATGTTGGTGTTGTGGAGAAAGATCCAAGTTCGCGTTACGCACGGTATGATGAAATGCTGGGGAAAGGAGCCTTCAAGACTGTGTATGCCAATTTAGTGAATAACGCATTTGTTTTCTTTTGGTACTTTTTTTTTATTTCTTTGATTTTTTATTTATTTATTGATTTATTACCTTGTTGTAGATATAAGGCGTTTGATGAAGTAGGTGGAATAGAAGTTGCATGGAACCAAATCAATATTGAGGATGTTTTGCAGTCACCACAAGAGTTTGAAAAGTTGTATTCGGAGATTCATCTGCTCAAGTCTTTGAAACATGAAAATATCATTAAGCTCTATAATTCTTGGGTGGATGATAAGGCAAGGACTATTAACATGATAACTGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTATAGGAAGAAACATAAGAATGTTGATATGAAAGCCATCAAGAACTGGGCGAGGCAGATTCTTCGAGGTTTATGCTTTCTGCATAGTCATAGTCCTCCTGTTATTCATAGGGACCTGAAATGTGATAATATTTTTGTTAATGGGAATAATGGACAAGTTAAGATTGGAGATCTTGGGTTGGCAATTGTCATGCAGCAGCCTACTGCCCGGAGTGTCATTGGCACACCAGAATTCATGGCCCCGGAGCTTTATGAGGAAGAATATGATGAACTTGTTGACATATATTCCTTTGGCATGTGTATGCTGGAAATGATCACCTGTGAGTACCCGTATAGTGAATGTAGAAATCCGGCACAGATATATAAAAAAGTTACTTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTATGCTGAAGCAATTTATAGAAAAGTGTCTAGTTCCAGCATCTATGAGATTGTCTGCATCCGAACTACTGAAAGACCCATTCCTTGCAACCGAAAATGCAAAGGAGATCAAACACGATACATTGCAGCTGCCTAATTCCCCCACCAAATTGGTGAATCCACCAACATGTGAACCTCATCCCATGGAGATAGATTCAAACTTCAGGCATACTTCACCTGGCTCCTCTGTGAGAAGGATTGAAGAAACTTCTCATGTTTCAGTTTTTGATCTCTTGAGGGTAACTGAGAATAACGAATTTAGGTTAAGAGGGGAGAGAAATTCTGACAGTACTATTTCACTTACGCTGCGAATTGCTGATGCACATGGTGGAGCAAGGAATATCCATTTTCCATTCTATATTGTATCTGATACAGTAATTTCAATTGCTGAGGAGATGGTAGAACATCTGGAACTAAAAAATGAGGACGTAGCTGTCATTGCTGAGCTAATACACAACATGATTGTTAAACTTGTGCCCAACTGGAAACCTTTATTTGAGAATCTCTCATCTGGAATAGATCGTTTATACTGGCCTTCTTCTGAAGTTCAGAATGGTGAAACATTAAACTGCCATTGGCCATCACAATCAAGTGATTTTGATATGAGGGCAATTGATAAGGATTTATTTTGCTCACGGCTTGTCGATGGGGAAGAACAGGAGAAACAAGAATCTGTTATTTCTGATATTTCAGCGGAGTATGGGATTACAATTGCCTCAGATTCTAAAGTTGTGGAGCCTGATTTTCTTTTTCTTCATGAATGCTGCGAGAGATCCAATGGCTTCAATTCCAATTCAGGTGTCAGGTTTTGTGGTCAAGAAGATGGACACAGGAATCAATCAGAGAACTCAGCAGGGTCTTTAATCAATTTGTGTTGCAGTCCATCCAAAAACTTTGATATGTCAAGCACGTGTTCCCTTACTCTAGCTGACAATGATAATTCAAACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCATCAGTGCTTTCGTGAGCTTGAGAAGATGAGGGAGCAAGCCATGGAAAACGCCAAAAGGAGATGGATAACAAGGAAGAAAATATCAGTTATATGA 1968 0.3938 MDSETGDDVGVVEKDPSSRYARYDEMLGKGAFKTVYANLVNNAFVFFWYFFFISLIFYLFIDLLPCCRYKAFDEVGGIEVAWNQINIEDVLQSPQEFEKLYSEIHLLKSLKHENIIKLYNSWVDDKARTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNNGQVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYDELVDIYSFGMCMLEMITCEYPYSECRNPAQIYKKVTSGIKPAALAKVNDPMLKQFIEKCLVPASMRLSASELLKDPFLATENAKEIKHDTLQLPNSPTKLVNPPTCEPHPMEIDSNFRHTSPGSSVRRIEETSHVSVFDLLRVTENNEFRLRGERNSDSTISLTLRIADAHGGARNIHFPFYIVSDTVISIAEEMVEHLELKNEDVAVIAELIHNMIVKLVPNWKPLFENLSSGIDRLYWPSSEVQNGETLNCHWPSQSSDFDMRAIDKDLFCSRLVDGEEQEKQESVISDISAEYGITIASDSKVVEPDFLFLHECCERSNGFNSNSGVRFCGQEDGHRNQSENSAGSLINLCCSPSKNFDMSSTCSLTLADNDNSNELQLELEAIETQYHQCFRELEKMREQAMENAKRRWITRKKISVI 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi908g00009 655 ProSiteProfiles Protein kinase domain profile. 21 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00009 655 CDD STKc_WNK 19 311 - -
Gabi908g00009 655 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 394 450 IPR024678 GO:0004674|GO:0005524
Gabi908g00009 655 Gene3D Transferase(Phosphotransferase) domain 1 137 319 - -
Gabi908g00009 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Gabi908g00009 655 Gene3D - 392 475 - -
Gabi908g00009 655 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 640 - -
Gabi908g00009 655 SUPERFAMILY Protein kinase-like (PK-like) 69 361 IPR011009 -
Gabi908g00009 655 Coils Coil 617 637 - -
Gabi908g00009 655 FunFam Probable serine/threonine-protein kinase WNK1 66 135 - -
Gabi908g00009 655 Pfam Protein kinase domain 69 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00009 655 SMART serkin_6 58 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi908g00009 655 FunFam probable serine/threonine-protein kinase WNK9 137 316 - -
Gabi908g00009 655 Gene3D Phosphorylase Kinase; domain 1 5 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi908g00009 Gabi-Chr908 142802 146012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi908g00009 12 654 MAP Kinase Kinase Kinase AT5G41990 50.233 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi908g00009 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi908g00009 K08867 - gmx:100783717 941.028