Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi907g00010 ATGGGTGAACCTTACGGGCTACCGGAGGATCTCCGGCGGCTTATATCAGCAAGAAACCATTTCAACATCAACACAAGTTTACCAGAGTCACTGTGTAGTGTCCACCATGGACTGAACGTTGCTGCTGCTGCTGCTCCTCCTCCTCCACCTAATAGCTACGACCCCATCATGGTTGGGGATGTTTTCTTCCCTCGTGGCTTCACTCACTTTGCACACCATGACTATTTATCCAGTGTCAACCCCACAACTAACACCACCACCACCACCACCACTACTACTAATACTACTACTGCTGCTGTTGATGCTGCTACTGCGTTGGACTATGCTACTGCTCCATTCTGTGGCATACAGGCTGCAGAAAAAGGGTGGCTTGGGTTTGATTCTGGGAACAACAGGTGGCCTAGACAGGAAACTCTTTCTCTTCTAGAGATCAGATCTCGTCTTGATTCCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGAAAGCACTACAGATTCTTCAGGCAGCTTGAAGCAATATGTGGAGAAGCAACCGCTCATGCCTCAACTTCAAATAAAACCCATCATGCTGCAAACACTTCTGGTATTCAAACTCCAAGCTTCAAAATTAACCAAGACAATGGTGATTTTAATAACCTCAAGTGCTCAGAGAGCCTCAGTTTCTCAAATTCATCTGAATTTGAGACATCCTCATCTGAAAACAATGATGAGGATCTTTCAGCTATTGCATACATGATGAAGCAATCAAGGGGTAAGCAGAAAGGTTTAGACCAGCAGAGAGAAAGTCATAGGAGGCTCAGAAAAAGTTGGAGAGCTAAAGTGGAGGAGATTGTGGATTCCCACATGAGGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAGCAAGAGATGGTGTCTAAGGAGGAAGAAAGGAAGAAAAAAGAGTCAATGAGGTTTGACCAAGAAGTACATGAACTTTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGACATTGTGAGGAAACATATTGGGATAGAACTTGAAACATTACCATTAGATGAAGCTATGGTTGAAGAACAACCAAATAAGAATAAGGGCCATGCAAATAATGATGCCAACGAATATCCCAGTGAAGCTGTTGATCATAGCAGTAGCAGATGGACAGAAATGGAAATTTCAAATTTGATACAGCTAAGGACTGGTTTTGAACATCGATTCAGAGAAAATGGGTACTTGGAAAATGGCCTTTGGGATGAAATAGCTGCAAAATTGGCTTGTTTGGGCTTTGATAGGAGTGCAACTGAGTGCAAGCAAATATGGGATGAGATTAGCATCTCTCTCAGAAGAACAGTGGATTCTGGTGCTAAAACAAGGCCTTGGTGTTTGGGACTTAAGCTTAGGGATGATGATGACCTTTGA 1581 0.4263 MGEPYGLPEDLRRLISARNHFNINTSLPESLCSVHHGLNVAAAAAPPPPPNSYDPIMVGDVFFPRGFTHFAHHDYLSSVNPTTNTTTTTTTTTNTTTAAVDAATALDYATAPFCGIQAAEKGWLGFDSGNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEATAHASTSNKTHHAANTSGIQTPSFKINQDNGDFNNLKCSESLSFSNSSEFETSSSENNDEDLSAIAYMMKQSRGKQKGLDQQRESHRRLRKSWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMVSKEEERKKKESMRFDQEVHELWAKEKAWVEARDAALIDIVRKHIGIELETLPLDEAMVEEQPNKNKGHANNDANEYPSEAVDHSSSRWTEMEISNLIQLRTGFEHRFRENGYLENGLWDEIAAKLACLGFDRSATECKQIWDEISISLRRTVDSGAKTRPWCLGLKLRDDDDL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi907g00010 526 FunFam Trihelix transcription factor GT-2 441 503 - -
Gabi907g00010 526 PANTHER FI21293P1 107 513 - -
Gabi907g00010 526 SMART sant 129 192 IPR001005 -
Gabi907g00010 526 SMART sant 437 500 IPR001005 -
Gabi907g00010 526 MobiDBLite consensus disorder prediction 420 436 - -
Gabi907g00010 526 FunFam trihelix transcription factor PTL-like 133 195 - -
Gabi907g00010 526 CDD GT1 131 197 - -
Gabi907g00010 526 CDD GT1 439 504 - -
Gabi907g00010 526 Coils Coil 338 365 - -
Gabi907g00010 526 Pfam Myb/SANT-like DNA-binding domain 439 508 IPR044822 -
Gabi907g00010 526 Pfam Myb/SANT-like DNA-binding domain 131 218 IPR044822 -
Gabi907g00010 526 ProSiteProfiles Myb-like domain profile. 131 190 IPR001005 -
Gabi907g00010 526 Gene3D - 133 195 - -
Gabi907g00010 526 Gene3D - 441 503 - -
Gabi907g00010 526 MobiDBLite consensus disorder prediction 414 436 - -
Gabi907g00010 526 ProSiteProfiles Myb-like domain profile. 433 498 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi907g00010 Gabi-Chr907 67072 69394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi907g00010 5 503 Trihelix Transcription Factor Family AT5G03680 39.376 9.37e-91 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi907g00010 Myb_DNA-bind_4 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi907g00010 - - gmx:100787750 696.041