Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi907g00008 ATGATTTCTTCTGGGGTTAACTTGGTGATGACTGTGATTGGGTTTGCGGTGAGCACCATGTTCATTGTTTTCGTCTGCACCAGGCTTATCTGTGCTCGAATTCACTTGAATGCTTCAAGGAGATCCTTTCTTATTGCTTCCAGATCCAATCTCGGCATGATGGAGCGGGGTTGCCATGGTCTTGAACGCATAGCTATAGCCAAATTTCCTACAAAGAAGTACAGTGACAAGTTTTTTGCTGCGGCAGAAAATTCTCAATGTACAGTCTGCCTCTCAGAGTACCAAGGTGAAGATATACTGCGTATCCTCCCCTATTGTGGACACTCATTCCATGTTACCTGCATAGACTTATGGCTGCAACAGAATTCCACTTGTCCCGTTTGTCGAATATCATTGCGCGAATTTCCTGAGAGAAAGCGATCGATGCAACCCTTGTTCAGTTCCGCTTTACAACCTCATTATGGCATGGAATCCTTTGACACTCATCATTATCACTACATGATGGCTGATAATGGGTTATCATCAAGAACCCCTGAAAACCATGGGGTGAACTCTATACAAGAGGATCATTTTCCATCTGAGGGTGGTGGAGCTGTCGCTAGGGACAATATCACCTGTTTAAGTCAGGGTGATTTCATTAAAGATGAAAGGAAGAAGCATGTAGAGAGCCCATCAAATTTCTAG 684 0.4386 MISSGVNLVMTVIGFAVSTMFIVFVCTRLICARIHLNASRRSFLIASRSNLGMMERGCHGLERIAIAKFPTKKYSDKFFAAAENSQCTVCLSEYQGEDILRILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKRSMQPLFSSALQPHYGMESFDTHHYHYMMADNGLSSRTPENHGVNSIQEDHFPSEGGGAVARDNITCLSQGDFIKDERKKHVESPSNF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi907g00008 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 134 IPR013083 -
Gabi907g00008 227 CDD RING-H2_EL5-like 86 129 - -
Gabi907g00008 227 SMART ring_2 87 128 IPR001841 -
Gabi907g00008 227 PANTHER OS11G0150450 PROTEIN 1 187 - -
Gabi907g00008 227 Pfam Ring finger domain 86 129 IPR001841 -
Gabi907g00008 227 SUPERFAMILY RING/U-box 74 135 - -
Gabi907g00008 227 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi907g00008 Gabi-Chr907 35052 40232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi907g00008 13 143 C3H Transcription Factor Family AT4G10150 34.074 4.49e-20 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi907g00008 - - gmx:100794979 432.565