Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi904g00007 ATGTCTTCCTCCCCTCATAACTCTTCTCCTGATAATGCAACACCTGATAATGCCACACCTGATAACACAACCCCTGATGATGCCGCTCCTGATAACTCAACACCTGATAATTCCTCTCCTGATAATTCAACACCTGATAACTCAACACCTGATAATGCCGCACCTGATAATTCAACAGCTGATAACTCAACACCTGATAATAAAACAGCTGATAACTCAACACCTGATAATGCCACACCTGATAATTCTACACCTAATAATTCTAAACCTAATGATGCTGCTAGTTCCTCATCATCACCTACTTTAGTGCCGAGTAAGTCTTCAACTACACCACCACCACCACCACCAGCAGCACCAAACAAATCGATATCAAATGGAAAACAGAGCCAGGAGAATGACAGCAAAGCAGCAGTTGGAGCTGCGCTTGGAGTAGGGTTTGTTCTTCTTCTTGTGGTCGTTTTTTGTTTCATTTGGTCAAGGAAGAAGAAACGAAAGCAAAAGTACTATTACGGAGAAGCTTCCCATGGACAAGGGAGTAACTACTACAACAGTAGCCAGCACCCTCTCCCTAGTTGGCAATCAGGTCAGGGTCCTCATGGGTCGGATCATGTTGCAAGGATACACCAATCACCTAATGGAATGATGGGTCCTCCTAATGGTAGCTGGGGTCCACCACCTCCTCTAATGTACAGTGGTGACATGAGTTCCAATTACTCAATGGGAATGGGACCAGGTTCTCTACCTCCTCCTTCTCCAGGCCTTGCTCTTACACTTAAGGGGGGTACCTTCACTTATGAGGAATTAGCAGCAGCCACTAGAGGATTTGCAAATGAGAATATTATAGGACAGGGTGGATTCGGTTATGTCCATAAGGGAGTATTGCCTAATGGAAAAGAAGTGGCAGTTAAGAGTCTCAAAGCAGGTAGTGGACAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGACATCTTGTGTCACTTGTTGGATACTGTATTTGTGGAGAGCAGAGAATGTTGGTCTATGAATTTGTTCCCAACCAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGCGAATTGCACTAGGATCCGCAAAAGGGCTTGCCTACCTTCATGAAGACTGTAGTCCTCGCATTATCCACCGTGATATTAAAGCTTCTAATGTCCTCATTGATGATAGCTTCGAAGCTAAGGTGTCTGATTTTGGATTGGCTAAGTTGACTACTGATACCAATACGCATGTCTCAACTCGTGTCATGGGAACATTCGGGTACCTGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGACCTGTGGATCTGACAAATACCATGGACGATAGCTTAGTGGACTGGGCTCGACCACTCCTGAGTCGTGGGCTGGAGGAAGATGGCAACTTTGGAGAGTTGGTTGATCCATTTTTGGAGGGCAACTACAATAGTCAAGAAATGACAAGGATGGCAGCCTGTGCTGCTGCAAGCATTCGTCATTCGGCTAAGAAGCGCTCAAAAATGAGTCAGATAGTAAGAGCATTGGAAGGAGATGTATCACTGGAAGACTTGAAGGAGGGGATGATGAAGTCTGGAGGGCAAAGCAGTGTTTACACATCTTCATCTGGGAGCTCAGACTATGATACAATGCAATACAATGCTGATATGGCAAAATTCAGGAAGGCAATAATGTCAAGCCAGGAATTTGGTGACAGCAGCGACCTCTCTAGTAAGGAGATGGGCTATCGTTAG 1851 0.45 MSSSPHNSSPDNATPDNATPDNTTPDDAAPDNSTPDNSSPDNSTPDNSTPDNAAPDNSTADNSTPDNKTADNSTPDNATPDNSTPNNSKPNDAASSSSSPTLVPSKSSTTPPPPPPAAPNKSISNGKQSQENDSKAAVGAALGVGFVLLLVVVFCFIWSRKKKRKQKYYYGEASHGQGSNYYNSSQHPLPSWQSGQGPHGSDHVARIHQSPNGMMGPPNGSWGPPPPLMYSGDMSSNYSMGMGPGSLPPPSPGLALTLKGGTFTYEELAAATRGFANENIIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCICGEQRMLVYEFVPNQTLEHHLHGKGVPTMDWPTRMRIALGSAKGLAYLHEDCSPRIIHRDIKASNVLIDDSFEAKVSDFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDLTNTMDDSLVDWARPLLSRGLEEDGNFGELVDPFLEGNYNSQEMTRMAACAAASIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMMKSGGQSSVYTSSSGSSDYDTMQYNADMAKFRKAIMSSQEFGDSSDLSSKEMGYR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi904g00007 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 395 407 IPR008271 GO:0004672|GO:0006468
Gabi904g00007 616 Gene3D Phosphorylase Kinase; domain 1 255 350 - -
Gabi904g00007 616 FunFam proline-rich receptor-like protein kinase PERK1 253 350 - -
Gabi904g00007 616 Pfam Protein tyrosine and serine/threonine kinase 278 477 IPR001245 GO:0004672|GO:0006468
Gabi904g00007 616 SUPERFAMILY Protein kinase-like (PK-like) 256 548 IPR011009 -
Gabi904g00007 616 MobiDBLite consensus disorder prediction 181 198 - -
Gabi904g00007 616 MobiDBLite consensus disorder prediction 181 203 - -
Gabi904g00007 616 Gene3D Transferase(Phosphotransferase) domain 1 351 564 - -
Gabi904g00007 616 ProSiteProfiles Protein kinase domain profile. 275 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi904g00007 616 SMART serkin_6 275 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi904g00007 616 MobiDBLite consensus disorder prediction 1 132 - -
Gabi904g00007 616 ProSitePatterns Protein kinases ATP-binding region signature. 281 303 IPR017441 GO:0005524
Gabi904g00007 616 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 144 596 IPR047117 -
Gabi904g00007 616 MobiDBLite consensus disorder prediction 1 105 - -
Gabi904g00007 616 FunFam Proline-rich receptor-like protein kinase PERK1 351 559 - -
Gabi904g00007 616 MobiDBLite consensus disorder prediction 106 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi904g00007 Gabi-Chr904 113239 119660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi904g00007 103 607 Trihelix Transcription Factor Family AT1G70460 49.318 2.26e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gabi904g00007 PK_Tyr_Ser-Thr 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi904g00007 - - gmx:100805872 791.956