Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00016 ATGGACAAGTTGGAGTACTCAAAGATGATGATGATGATGAGGGATGATGAGGTGGTTATGAAGAAGAGGGAGACCATAGAGGATTATTGTGTTGACGAACAAAATGGTTACTTGGAAGATGATAAGAAGAAGAAAGGGGTGGTTGTGGCTTGTGTTGGGAAGAAAGACTCTGGTGGTGGTGGTGGTGGAGGAAGCAGCATTAGGTGTTGTCAAGTGGAGAAGTGTAACACTGATCTTCACGATGCAAAGCAGTATCATAAGAGGCACAAGGTTTGTGAATATCATGCCAAGGCTCAGGTCGTGCTTGTTGGTGGTTTACGACAACGTTTTTGTCAGCAATGTAGCAGATTCCACGAGTTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGCAGGCGTTTGGCTGGACACAATGAAAGGAGAAGAAAGAACTCTGAGTCTCAAGCAGAAGGCTCAAGCCGAAAAGGTACAGGCCCTCAGTTGAAGGACATTGCTTGTGGGCAAGTTGATGATAGAGGGAGAATTCAGACAACAATCCAAGAAAATGCAGCTTACAAACGTTTCCAGATAAGTTGA 576 0.4427 MDKLEYSKMMMMMRDDEVVMKKRETIEDYCVDEQNGYLEDDKKKKGVVVACVGKKDSGGGGGGGSSIRCCQVEKCNTDLHDAKQYHKRHKVCEYHAKAQVVLVGGLRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNSESQAEGSSRKGTGPQLKDIACGQVDDRGRIQTTIQENAAYKRFQIS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00016 191 MobiDBLite consensus disorder prediction 135 163 - -
Gabi903g00016 191 Gene3D - 60 131 IPR036893 GO:0003677|GO:0005634
Gabi903g00016 191 ProSiteProfiles Zinc finger SBP-type profile. 67 144 IPR004333 GO:0003677
Gabi903g00016 191 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 153 IPR044817 GO:0003677
Gabi903g00016 191 FunFam Squamosa promoter-binding-like protein 14 61 131 - -
Gabi903g00016 191 SUPERFAMILY SBT domain 68 147 IPR036893 GO:0003677|GO:0005634
Gabi903g00016 191 Pfam SBP domain 70 143 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00016 Gabi-Chr903 178014 180169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00016 68 190 SBP-box Gene Family AT3G15270 57.600 1.98e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi903g00016 SBP 4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00016 - - zju:107406208 237.269