Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00014 ATGGTTTCCACTGAAAGGTTGGAGCTTTGGTTGTTTAAGAGGAGGAAGGTTCTGGGAATTTTGTTCCAGATTGTATTTGGATGGTGGGTTGTTCTACTGTTTCTTCGTCCTGTGGTGGGTCTCAGACCCTTGAGGGATAGAACTCGGTCCTCGGGTGATGAGTGGCTATTTACAAGAAAAGACGAGAGTGACTTAGGTCCATTTTCACAATGGAATATAACAGGAACTTACAGAGGGTCTTGGAAGTTTTTAGATACCACAAATGGATCTTCCAGGTTTCCAGATATCAGAAAAACAAATGGCAATTCCTTAATTGAATTAGTTAGTACGCCCACAAAGATAACTGGAGTACATTATGTCCAGGGGGTAGTTATATTCCATGATGTGTTTGAGAATGAATACGATGTTGGTGGTGCTCAAATCAGAGTAGAAGGTGTGTATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAGGGAGAGTTAAATCAGGATGAAGATTATATTTTATCAAATCCATATCATCTGCTTGGAGTTTTCTCTTCTCAGGTACTGCCAGATTCTTCGCGAGATAAGATGTGGAGAAGAAAACATTCCCTGATGCAAGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGGTTTCACACTTGCCATCATCAAAAAATGAAGGCGAGCATGATCAGTTTCATTTAGAAGGGTTAATGGAGAGTCCCTCTGCTGATGATGATGGGGACTGCTTCTCACCATTACTACTAAATGCAACTTCTGTTAGAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTATATCTTTCTTGCAAGTTCTTCTATTGATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCATATCTTTGTCTTTTACATCTGACTGCGGGAATACTGGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTCATTCGTGATTCACGCAAACCACTGCATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTAGCAATCCCATTTTATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGCTTGTTTGGCTGTATTTATTTGGCTTCAAGCAGCAATTCTTCTGCTTCAGCACTATCTTGGGTCGCGATTTTTCATTCCTCATCAGATCCTACCCGAGAAATACAGCTATTATAGGAGGTTTGATCAGGGTACAAGACATTCTACAGATTGTGTTATTTGCATGACAACCATTGATCTTTCCCAAAGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCATTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGTCGCCCACTACCACCTGCATGA 1713 0.4034 MVSTERLELWLFKRRKVLGILFQIVFGWWVVLLFLRPVVGLRPLRDRTRSSGDEWLFTRKDESDLGPFSQWNITGTYRGSWKFLDTTNGSSRFPDIRKTNGNSLIELVSTPTKITGVHYVQGVVIFHDVFENEYDVGGAQIRVEGVYIWPFRQLRMVANSGKEGELNQDEDYILSNPYHLLGVFSSQVLPDSSRDKMWRRKHSLMQDMEKHCNIEIAAQVSHLPSSKNEGEHDQFHLEGLMESPSADDDGDCFSPLLLNATSVRIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPFYIFGCPNNFMRIEPDKSWCACLAVFIWLQAAILLLQHYLGSRFFIPHQILPEKYSYYRRFDQGTRHSTDCVICMTTIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00014 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Gabi903g00014 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 507 570 IPR013083 -
Gabi903g00014 570 PANTHER RING ZINC FINGER PROTEIN 130 569 - -
Gabi903g00014 570 Pfam Ring finger domain 519 564 IPR001841 -
Gabi903g00014 570 SMART ring_2 520 563 IPR001841 -
Gabi903g00014 570 CDD RING-H2_TUL1-like 514 569 - -
Gabi903g00014 570 SUPERFAMILY RING/U-box 506 569 - -
Gabi903g00014 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Gabi903g00014 570 FunFam E3 ubiquitin-protein ligase, putative 506 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00014 Gabi-Chr903 155391 164440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00014 520 567 C3H Transcription Factor Family AT4G12190 37.500 1.81e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00014 K23788 - gmx:100780140 1053.12