Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi903g00011 ATGGATCATCAACACGGAAATCAACCTTCTTCCTCAACCAAAATACAAAGAAGGGTCATAGAGAAAAACCGGAGAAACCAGATGAAGAATTTATATTCCAAACTCAACTCTCTTCTCCCTAACTATCATTCTCAGGAAGCATTGCCACTGCCTGATCAAATAGATGAGGCTATTAACTATATTAAGAGCCTAGAGACAAAGGTGAAGAAGATGGCGCAAGAAAAGAAAGAAATCTTAATGGGGAGGAAGAGACCTCGTTGTGGAACCTTAAATTCACCAAAACTCGAGATTCATGAAATGGGTTCCTCGCTAGAAGTTATTCTGGATTGTGAGTTTGATAAACAGTTCATTTTCAAAGAAATTATTCGAATTTTGCATGAAGAGAACATCGAAGTCATCAGTGCCAATTCTTCACTGGCTGGAAATTCTGTTCTTCATGTTGTGCACGCCAAGATTCGGCAATCTTTCTTTCAATTCGGAGCAACCAAAGTAAGTGAGAGATTGAAAAGGCTTGTGACCGGATCAGTCAGTGATGTGGAAACAGAGACTGAATTGTGGGATTTTGAAATTGGTTCTGAGACTTGTGGGCTTCTAGATCCTATGGTAAACAACGGTTTACCAATTCTTTTGTAA 633 0.3918 MDHQHGNQPSSSTKIQRRVIEKNRRNQMKNLYSKLNSLLPNYHSQEALPLPDQIDEAINYIKSLETKVKKMAQEKKEILMGRKRPRCGTLNSPKLEIHEMGSSLEVILDCEFDKQFIFKEIIRILHEENIEVISANSSLAGNSVLHVVHAKIRQSFFQFGATKVSERLKRLVTGSVSDVETETELWDFEIGSETCGLLDPMVNNGLPILL 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi903g00011 210 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Gabi903g00011 210 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 81 IPR036638 GO:0046983
Gabi903g00011 210 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 172 - -
Gabi903g00011 210 FunFam Transcription factor bHLH162 5 91 - -
Gabi903g00011 210 SMART finulus 18 70 IPR011598 GO:0046983
Gabi903g00011 210 Gene3D - 6 87 IPR036638 GO:0046983
Gabi903g00011 210 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Gabi903g00011 210 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi903g00011 Gabi-Chr903 94130 95444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi903g00011 1 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 37.037 3.31e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi903g00011 HLH 6.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi903g00011 - - gmx:100817883 268.085